RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 LRRC37BQ96QE4 947 aa23.6■■□□□ 1.37
MSX2-201ENST00000239243 RC3H2Q9HBD1 1191 aaKnown RBP23.6■■□□□ 1.37
MSX2-201ENST00000239243 SNX15Q9NRS6 342 aa23.6■■□□□ 1.37
MSX2-201ENST00000239243 SPG21Q9NZD8 308 aa23.6■■□□□ 1.37
MSX2-201ENST00000239243 GGT7Q9UJ14 662 aa23.6■■□□□ 1.37
MSX2-201ENST00000239243 COCHO43405 550 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 RAB33AQ14088 237 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 SMAD1Q15797 465 aaKnown RBP23.59■■□□□ 1.37
MSX2-201ENST00000239243 TMCO4Q5TGY1 634 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 CIR1Q86X95 450 aaPredicted RBP23.59■■□□□ 1.37
MSX2-201ENST00000239243 THOC1Q96FV9 657 aaKnown RBP23.59■■□□□ 1.37
MSX2-201ENST00000239243 MAGEH1Q9H213 219 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 BNIP1Q12981 228 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 LBRQ14739 615 aaKnown RBP23.59■■□□□ 1.37
MSX2-201ENST00000239243 N4BP2L1Q5TBK1 243 aaPredicted RBP23.59■■□□□ 1.37
MSX2-201ENST00000239243 CCDC91Q7Z6B0 441 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 DDX53Q86TM3 631 aaKnown RBP23.59■■□□□ 1.37
MSX2-201ENST00000239243 CNTN4Q8IWV2 1026 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 KLHL5Q96PQ7 755 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 ATP13A1Q9HD20 1204 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 MAFFQ9ULX9 164 aa23.59■■□□□ 1.37
MSX2-201ENST00000239243 PRAMEF11O60813 436 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 ELF1P32519 619 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 CDH4P55283 916 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 CHI3L2Q15782 390 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 PCSK7Q16549 785 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 ZNF778Q96MU6 729 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 RANBP9Q96S59 729 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 MCMBPQ9BTE3 642 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 MECRQ9BV79 373 aa23.58■■□□□ 1.37
MSX2-201ENST00000239243 UXTQ9UBK9 157 aaPredicted RBP23.58■■□□□ 1.37
MSX2-201ENST00000239243 HEATR9A2RTY3 570 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 GJB5O95377 273 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 TIMP1P01033 207 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 CD86P42081 329 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 CCDC153Q494R4 210 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 BBS5Q8N3I7 341 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 GABPB2Q8TAK5 448 aaPredicted RBP23.57■■□□□ 1.36
MSX2-201ENST00000239243 POLR1EQ9GZS1 481 aaKnown RBP23.57■■□□□ 1.36
MSX2-201ENST00000239243 RHOJQ9H4E5 214 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 PLIN3O60664 434 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 SKIV2L2P42285 1042 aaKnown RBP23.57■■□□□ 1.36
MSX2-201ENST00000239243 SPDYAQ5MJ70 313 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 KIAA0930Q6ICG6 404 aaPredicted RBP23.57■■□□□ 1.36
MSX2-201ENST00000239243 VPS39Q96JC1 886 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 C11orf49Q9H6J7 331 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 STK39Q9UEW8 545 aa23.57■■□□□ 1.36
MSX2-201ENST00000239243 PRRG1O14668 218 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 SLC6A4P31645 630 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 PPM1AP35813 382 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 SERPINH1P50454 418 aaKnown RBP23.56■■□□□ 1.36
MSX2-201ENST00000239243 MAXP61244 160 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 DEFB103AP81534 67 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 BST1Q10588 318 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 OVGP1Q12889 678 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 ZNF235Q14590 738 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 FAM117BQ6P1L5 589 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 NLRP9Q7RTR0 991 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 GPR65Q8IYL9 337 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 DDX50Q9BQ39 737 aaKnown RBP23.56■■□□□ 1.36
MSX2-201ENST00000239243 TREX1Q9NSU2 369 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 CLDN11O75508 207 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 ACVRL1P37023 503 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 POLD2P49005 469 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 WDR5P61964 334 aaKnown RBP23.56■■□□□ 1.36
MSX2-201ENST00000239243 DSC2Q02487 901 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 PLD1Q13393 1074 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 DENND1CQ8IV53 801 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 PPP1R14CQ8TAE6 165 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 TADA1Q96BN2 335 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 MYEOVQ96EZ4 313 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 ATXN7L3BQ96GX2 97 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 GPR22Q99680 433 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 FAM167BQ9BTA0 163 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 ATXN3LQ9H3M9 355 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.56■■□□□ 1.36
MSX2-201ENST00000239243 EMCNQ9ULC0 261 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 CHKBQ9Y259 395 aa23.56■■□□□ 1.36
MSX2-201ENST00000239243 MTO1Q9Y2Z2 717 aaKnown RBP23.56■■□□□ 1.36
MSX2-201ENST00000239243 ZFP37Q9Y6Q3 630 aaPredicted RBP23.56■■□□□ 1.36
MSX2-201ENST00000239243 MIA3Q5JRA6 1907 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 CFAP73A6NFT4 308 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 ATP5HO75947 161 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 STC2O76061 302 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 VAPBO95292 243 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 MMP2P08253 660 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 GJA8P48165 433 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 CREMQ03060 361 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 GNA12Q03113 381 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 THOC5Q13769 683 aaKnown RBP23.55■■□□□ 1.36
MSX2-201ENST00000239243 FASTKD1Q53R41 847 aaKnown RBP23.55■■□□□ 1.36
MSX2-201ENST00000239243 ESRP1Q6NXG1 681 aaKnown RBP23.55■■□□□ 1.36
MSX2-201ENST00000239243 RFWD3Q6PCD5 774 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 TCEAL8Q8IYN2 117 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 SIN3BO75182 1162 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 TOP3BO95985 862 aaKnown RBP23.55■■□□□ 1.36
MSX2-201ENST00000239243 CORO1AP31146 461 aaKnown RBP23.55■■□□□ 1.36
MSX2-201ENST00000239243 CHRNA4P43681 627 aa23.55■■□□□ 1.36
MSX2-201ENST00000239243 ARCN1P48444 511 aaKnown RBP23.55■■□□□ 1.36
MSX2-201ENST00000239243 EPHB3P54753 998 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms