RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 THOP1P52888 689 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 FOLH1Q04609 750 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 RWDD4Q6NW29 188 aaKnown RBP18.99■□□□□ 0.63
CPSF3-201ENST00000238112 PKN3Q6P5Z2 889 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 DCLRE1AQ6PJP8 1040 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 TBL1YQ9BQ87 522 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 TMEM30AQ9NV96 361 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 XPR1Q9UBH6 696 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 CFLARO15519 480 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 PIM1P11309 404 aaPredicted RBP18.99■□□□□ 0.63
CPSF3-201ENST00000238112 DNAJB1P25685 340 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 CHN2P52757 468 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 ADAM17P78536 824 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 ART3Q13508 389 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 GRM2Q14416 872 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 POU6F1Q14863 301 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 PDCD2Q16342 344 aaPredicted RBP18.99■□□□□ 0.63
CPSF3-201ENST00000238112 CNPY1Q3B7I2 92 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 C11orf91Q3C1V1 193 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 CENPLQ8N0S6 344 aaPredicted RBP18.99■□□□□ 0.63
CPSF3-201ENST00000238112 CNTD1Q8N815 330 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 SPATA22Q8NHS9 363 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 NPLOC4Q8TAT6 608 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 STON2Q8WXE9 905 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 LRGUKQ96M69 825 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 GCNAQ96QF7 691 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 SLC38A7Q9NVC3 462 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 PTCH2Q9Y6C5 1203 aa18.99■□□□□ 0.63
CPSF3-201ENST00000238112 SCN4AP35499 1836 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 CAPN8A6NHC0 703 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 CLGNO14967 610 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 SNUPNO95149 360 aaKnown RBP18.98■□□□□ 0.63
CPSF3-201ENST00000238112 ENO3P13929 434 aaPredicted RBP18.98■□□□□ 0.63
CPSF3-201ENST00000238112 STMN1P16949 149 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 PSEN2P49810 448 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 RAB10P61026 200 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 RARS2Q5T160 578 aaKnown RBP18.98■□□□□ 0.63
CPSF3-201ENST00000238112 AP1ARQ63HQ0 302 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 TMEM198Q66K66 360 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 ZFP1Q6P2D0 407 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 PGAM4Q8N0Y7 254 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 CCNYL1Q8N7R7 359 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 IPMKQ8NFU5 416 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 ZSCAN18Q8TBC5 510 aaPredicted RBP18.98■□□□□ 0.63
CPSF3-201ENST00000238112 SMARCD1Q96GM5 515 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 VPS28Q9UK41 221 aa18.98■□□□□ 0.63
CPSF3-201ENST00000238112 CCL15-CCL14A0A0B4J2E2 113 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 DLX3O60479 287 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 VAPBO95292 243 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 GABRB3P28472 473 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 POLD2P49005 469 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 MRPS22P82650 360 aaKnown RBP18.97■□□□□ 0.63
CPSF3-201ENST00000238112 MPP1Q00013 466 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ZNF33AQ06730 810 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 CTBP1Q13363 440 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 HERC3Q15034 1050 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 CCL15Q16663 113 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ZNF423Q2M1K9 1284 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 PIGGQ5H8A4 983 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 PRAMEF19Q5SWL8 479 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 PM20D1Q6GTS8 502 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 USP50Q70EL3 339 aaPredicted RBP18.97■□□□□ 0.63
CPSF3-201ENST00000238112 PLEKHH3Q7Z736 793 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 TAC4Q86UU9 113 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 DENND6AQ8IWF6 608 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 PPHLN1Q8NEY8 458 aaKnown RBP18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ZC3H15Q8WU90 426 aaKnown RBP18.97■□□□□ 0.63
CPSF3-201ENST00000238112 DPF3Q92784 378 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 DCUN1D1Q96GG9 259 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 TSGA13Q96PP4 275 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 Q9H521 79 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ZNF385DQ9H6B1 395 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ZBTB26Q9HCK0 441 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 CDH9Q9ULB4 789 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 SLC45A1Q9Y2W3 748 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 FAM95CA0A1B0GW59 222 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ANXA9O76027 345 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 XRCC1P18887 633 aaPredicted RBP18.97■□□□□ 0.63
CPSF3-201ENST00000238112 NSUN2Q08J23 767 aaKnown RBP eCLIP18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ZNF460Q14592 562 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 FBXL19Q6PCT2 694 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 TLK2Q86UE8 772 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 CNTN4Q8IWV2 1026 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 LSMEM2Q8N112 164 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 ATPAF2Q8N5M1 289 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 MARK4Q96L34 752 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 WDR41Q9HAD4 459 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 EFCAB1Q9HAE3 211 aa18.97■□□□□ 0.63
CPSF3-201ENST00000238112 TARM1B6A8C7 271 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 HHLA1C9JL84 531 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 CACNG3O60359 315 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 MT-CYBP00156 380 aaPredicted RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 JUNP05412 331 aaKnown RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 PKNOX1P55347 436 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 CNGA3Q16281 694 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 BHLHA9Q7RTU4 235 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 PDCD6IPQ8WUM4 868 aaKnown RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 USP13Q92995 863 aaPredicted RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 LENG1Q96BZ8 264 aaPredicted RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 NXNL1Q96CM4 212 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms