RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MCF2L2Q86YR7 1114 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 KIAA0319LQ8IZA0 1049 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 UNC5BQ8IZJ1 945 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 ZSCAN18Q8TBC5 510 aaPredicted RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PPWD1Q96BP3 646 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 TMA16Q96EY4 203 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 RNF157Q96PX1 679 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 TCF12Q99081 682 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 SLC29A1Q99808 456 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 YTHDF1Q9BYJ9 559 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 UNC93B1Q9H1C4 597 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 UPF3AQ9H1J1 476 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PARVBQ9HBI1 364 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 HEATR9A2RTY3 570 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 APOL1O14791 398 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 DGKIO75912 1065 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 BCL10O95999 233 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ERBB2P04626 1255 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 APOA4P06727 396 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 MAP4P27816 1152 aaKnown RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 RBL1P28749 1068 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 BCAR1P56945 870 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 NFATC3Q12968 1075 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ITGADQ13349 1161 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 MTMR1Q13613 665 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 OXA1LQ15070 435 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 MAPRE2Q15555 327 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 TKFCQ3LXA3 575 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 PTPN20Q4JDL3 420 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CYP2U1Q7Z449 544 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 MPP5Q8N3R9 675 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 SLC15A4Q8N697 577 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 PLD5Q8N7P1 536 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 RNF169Q8NCN4 708 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ISL2Q96A47 359 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ACDQ96AP0 544 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF641Q96N77 438 aaPredicted RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ACO2Q99798 780 aaKnown RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 MROQ9BYG7 248 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 TPK1Q9H3S4 243 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 VRTNQ9H8Y1 702 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 POLR1BQ9H9Y6 1135 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CISHQ9NSE2 258 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF214Q9UL59 606 aaPredicted RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ADAMTS5Q9UNA0 930 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF839A8K0R7 811 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 STX16-NPEPL1H3BU86 382 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CNMDO75829 334 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CLPXO76031 633 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ASS1P00966 412 aaKnown RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ICAM1P05362 532 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 HSPA8P11142 646 aaKnown RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 TCN1P20061 433 aaPredicted RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 FGFR3P22607 806 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 GP5P40197 560 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 GSSP48637 474 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ACOT2P49753 483 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 PSME3P61289 254 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 KRT76Q01546 638 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 PRKAA1Q13131 559 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 STX5Q13190 355 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 PMS2P3Q13401 168 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 TMEM26Q6ZUK4 368 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CHSY3Q70JA7 882 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 RDM1Q8NG50 284 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ADI1Q9BV57 179 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CFHR5Q9BXR6 569 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 NIF3L1Q9GZT8 377 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 GBA3Q9H227 469 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ADAMTS10Q9H324 1103 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 WDR55Q9H6Y2 383 aaPredicted RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 NOL11Q9H8H0 719 aaKnown RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 MORF4L1Q9UBU8 362 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 DAPK2Q9UIK4 370 aa10.98□□□□□ -0.65
UPF3A-212ENST00000619079 CNOT6Q9ULM6 557 aaKnown RBP10.98□□□□□ -0.65
UPF3A-212ENST00000619079 ADGRA2Q96PE1 1338 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 FAM47E-STBD1D6RA91 191 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 J3QRK9 145 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 PLOD2O00469 737 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 NEMP1O14524 444 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 PGAM1P18669 254 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 MAGEA12P43365 314 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 HSD17B4P51659 736 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 OAZ1P54368 228 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 TRAF2Q12933 501 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 MMRN1Q13201 1228 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 PHKG1Q16816 387 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 GRTP1Q5TC63 336 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 FAM117BQ6P1L5 589 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 CASC4Q6P4E1 433 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 ABRAXAS1Q6UWZ7 409 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 ARL10Q8N8L6 244 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 REPS2Q8NFH8 660 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 RDH11Q8TC12 318 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF296Q8WUU4 475 aaPredicted RBP10.97□□□□□ -0.65
UPF3A-212ENST00000619079 FBXL8Q96CD0 374 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 NRBF2Q96F24 287 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 NSMCE3Q96MG7 304 aa10.97□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF347Q96SE7 839 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms