RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 FZD8Q9H461 694 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 IFT22Q9H7X7 185 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF334Q9HCZ1 680 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ARPP21Q9UBL0 812 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 GTF2A1LQ9UNN4 478 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 SLC8A2Q9UPR5 921 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ANKRD6Q9Y2G4 727 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 LUC7L2Q9Y383 392 aaKnown RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 PHF2O75151 1096 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 ZFPL1O95159 310 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 AFPP02771 609 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 RPLP2P05387 115 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 GALTP07902 379 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 HLA-EP13747 358 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 CD59P13987 128 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 BPIP17213 487 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 CCND1P24385 295 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 TNFRSF8P28908 595 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 GDI1P31150 447 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 TMPRSS15P98073 1019 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 SEMG2Q02383 582 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 GTF2H3Q13889 308 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 GBX1Q14549 363 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 KRT72Q14CN4 511 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 SART3Q15020 963 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 KARSQ15046 597 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 COBLL1Q53SF7 1204 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 L1TD1Q5T7N2 865 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 ARHGAP40Q5TG30 622 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 PMS2CLQ68D20 193 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF788Q6ZQV5 615 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 ECHDC2Q86YB7 292 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 DRC7Q8IY82 874 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 OR2I1PQ8NGU4 316 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 HDAC7Q8WUI4 952 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 PTCD3Q96EY7 689 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 TRMT61BQ9BVS5 477 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 SLC13A1Q9BZW2 595 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 PLEKHA4Q9H4M7 779 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 PXMP2Q9NR77 195 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 SMC4Q9NTJ3 1288 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 KCNE5Q9UJ90 142 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 DBNLQ9UJU6 430 aaKnown RBP4.79□□□□□ -1.64
LINC00540-201ENST00000611481 SLC4A4Q9Y6R1 1079 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 ABCA2Q9BZC7 2435 aa4.79□□□□□ -1.64
LINC00540-201ENST00000611481 GON4LQ3T8J9 2241 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 SPG11Q96JI7 2443 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 THADAQ6YHU6 1953 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 KDM3AQ9Y4C1 1321 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 COL4A2P08572 1712 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 TLN1Q9Y490 2541 aaKnown RBP4.78□□□□□ -1.64
LINC00540-201ENST00000611481 CCER2I3L3R5 266 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 PLK4O00444 970 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 CCL16O15467 120 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 KDM1AO60341 852 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 SNUPNO95149 360 aaKnown RBP4.78□□□□□ -1.64
LINC00540-201ENST00000611481 TSPY3P0CV98 308 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 TSPY8P0CW00 308 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 TGFB3P10600 412 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 FGFR4P22455 802 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 HALP42357 657 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 CASP2P42575 452 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 SLC11A1P49279 550 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 SCNN1BP51168 640 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 RAP2BP61225 183 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 TLE3Q04726 772 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 CCDC173Q0VFZ6 552 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 FAPQ12884 760 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 SEPT7Q16181 437 aaKnown RBP4.78□□□□□ -1.64
LINC00540-201ENST00000611481 PREPLQ4J6C6 727 aaPredicted RBP4.78□□□□□ -1.64
LINC00540-201ENST00000611481 METTL7BQ6UX53 244 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF572Q7Z3I7 529 aaPredicted RBP4.78□□□□□ -1.64
LINC00540-201ENST00000611481 FAM228AQ86W67 206 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF354CQ86Y25 554 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 TPH2Q8IWU9 490 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 MINDY1Q8N5J2 469 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 PDILTQ8N807 584 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 OR2W6PQ8NHA6 318 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 ELSPBP1Q96BH3 223 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 UROC1Q96N76 676 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 KCTD10Q9H3F6 313 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 PLCB1Q9NQ66 1216 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 ASB6Q9NWX5 421 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 KCTD5Q9NXV2 234 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 LUZP4Q9P127 313 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 DNAJB4Q9UDY4 337 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 STX8Q9UNK0 236 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 PI4KAP42356 2102 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 ADAMTS9Q9P2N4 1935 aa4.78□□□□□ -1.64
LINC00540-201ENST00000611481 UTP20O75691 2785 aaKnown RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 ZBED9Q6R2W3 1325 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 WDR19Q8NEZ3 1342 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 ATXN2Q99700 1313 aaKnown RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 SLC38A8A6NNN8 435 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 NEMP1O14524 444 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 ZNF263O14978 683 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 GPANK1O95872 356 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 HSPD1P10809 573 aaKnown RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 BCKDHBP21953 392 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 LGALS4P56470 323 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms