RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 RASA4BC9J798 803 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 SLC7A4O43246 635 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 RASA4O43374 803 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 PROSCO94903 275 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 CFIP05156 583 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 RARAP10276 462 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 VAV1P15498 845 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 ERCC2P18074 760 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 GLDCP23378 1020 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 SERPINB6P35237 376 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 MAGEA1P43355 309 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 INO80DQ53TQ3 878 aaPredicted RBP19.74■□□□□ 0.75
UPF1-212ENST00000601689 TRIM61Q5EBN2 209 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 CARD16Q5EG05 197 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 KCNT1Q5JUK3 1230 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 TMTC1Q8IUR5 882 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 PLPP6Q8IY26 295 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 TMIEQ8NEW7 156 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 SLC35G2Q8TBE7 412 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 NETO1Q8TDF5 533 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 MIR1-1HGQ9H1L0 117 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 KDM4CQ9H3R0 1056 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 EVLQ9UI08 416 aaPredicted RBP19.74■□□□□ 0.75
UPF1-212ENST00000601689 NEU3Q9UQ49 428 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.74■□□□□ 0.75
UPF1-212ENST00000601689 GPR179Q6PRD1 2367 aa19.74■□□□□ 0.75
UPF1-212ENST00000601689 K7ERQ8 282 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 KPNA3O00505 521 aaPredicted RBP19.73■□□□□ 0.75
UPF1-212ENST00000601689 ZMPSTE24O75844 475 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 SYPP08247 313 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 ACSL1P33121 698 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 MAN1A1P33908 653 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 MESDQ14696 234 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 CA9Q16790 459 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 TMCO3Q6UWJ1 677 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.73■□□□□ 0.75
UPF1-212ENST00000601689 KCTD6Q8NC69 237 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 OR2T34Q8NGX1 318 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 OR14C36Q8NHC7 312 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 RFFLQ8WZ73 363 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 LRIG1Q96JA1 1093 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 HEPHQ9BQS7 1158 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 PACSIN1Q9BY11 444 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 NEUROG2Q9H2A3 272 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 RCOR3Q9P2K3 495 aaPredicted RBP19.73■□□□□ 0.75
UPF1-212ENST00000601689 IMPACTQ9P2X3 320 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 PPM1HQ9ULR3 514 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 SLC6A14Q9UN76 642 aa19.73■□□□□ 0.75
UPF1-212ENST00000601689 TNRC6BQ9UPQ9 1833 aaKnown RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 TGM1P22735 817 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 NOP2P46087 812 aaKnown RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 ID4P47928 161 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 CDH6P55285 790 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 SERINC3Q13530 473 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 PDK2Q15119 407 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 SF3A2Q15428 464 aaKnown RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 ARTNQ5T4W7 220 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 SLC23A3Q6PIS1 610 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 SLC41A1Q8IVJ1 513 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 TXLNBQ8N3L3 684 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 OR2A12Q8NGT7 310 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 NSMCE1Q8WV22 266 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 DNASE2BQ8WZ79 361 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 SKA1Q96BD8 255 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 HMCESQ96FZ2 354 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 TNKS2Q9H2K2 1166 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 SP110Q9HB58 689 aa19.72■□□□□ 0.75
UPF1-212ENST00000601689 CWC15Q9P013 229 aaKnown RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 HECAQ9UBI9 543 aaPredicted RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 UBA2Q9UBT2 640 aaPredicted RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 FCF1Q9Y324 198 aaKnown RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 ATXN2Q99700 1313 aaKnown RBP19.72■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3DA0A087WVF3 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3IA0A087WXS9 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3EA0A087X179 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3KA0A087X1G2 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 A0A1B0GTW7 788 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3FA6NER0 549 aaPredicted RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 TMEM110-MUSTN1A8MSY1 372 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3LB9A6J9 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 SMAD6O43541 496 aaKnown RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 FSBPO95073 299 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 POP4O95707 220 aaKnown RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 IGSF6O95976 241 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 GSRP00390 522 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 SERPINF2P08697 491 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3HP0C7X1 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 IL1R2P27930 398 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 GJC1P36383 396 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 SLC1A1P43005 524 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 SLC25A11Q02978 314 aaKnown RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 PUM1Q14671 1186 aaKnown RBP eCLIP19.71■□□□□ 0.75
UPF1-212ENST00000601689 TEAD4Q15561 434 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 DAB2IPQ5VWQ8 1189 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 PEAR1Q5VY43 1037 aaPredicted RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 KIAA0895LQ68EN5 471 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3GQ6DHY5 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TBC1D3CQ6IPX1 549 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 DPY19L3Q6ZPD9 716 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms