RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 HDAC8Q9BY41 377 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 OSBPL2Q9H1P3 480 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 USP29Q9HBJ7 922 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 GDPD2Q9HCC8 539 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 ASNSD1Q9NWL6 643 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 ZNF212Q9UDV6 495 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 SLC12A6Q9UHW9 1150 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 VPS51Q9UID3 782 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 VANGL2Q9ULK5 521 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PNMA8BQ9ULN7 279 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 PCDHGA8Q9Y5G5 932 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 CSNK1G3Q9Y6M4 447 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 WASF2Q9Y6W5 498 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PTPN13Q12923 2485 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 COL27A1Q8IZC6 1860 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 IGLV3-10A0A075B6K4 115 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 A0A0D9SEW6 157 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 NEMP2A6NFY4 417 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 NOBOXO60393 691 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 PAGE1O75459 146 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 LETM1O95202 739 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 ADCY5O95622 1261 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SLC2A3P11169 496 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 KRT10P13645 584 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 NME1P15531 152 aaKnown RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 ZNF18P17022 549 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 RRM1P23921 792 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 CXCR3P49682 368 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 DUSP3P51452 185 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 PDX1P52945 283 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 CDH4P55283 916 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 MARSP56192 900 aaKnown RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 PFN3P60673 137 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 HNRNPKP61978 463 aaKnown RBP eCLIP6.25□□□□□ -1.41
VRK3-220ENST00000600259 CDK17Q00537 523 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 EIF2B5Q13144 721 aaKnown RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 ZNF177Q13360 481 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 PDCLQ13371 301 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ARL13BQ3SXY8 428 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 LINC00303Q3SY05 128 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ARSIQ5FYB1 569 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 RABGAP1LQ5R372 815 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 PERM1Q5SV97 790 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 BROXQ5VW32 411 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 KIAA1614Q5VZ46 1190 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 OR6B2Q6IFH4 312 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 GUSBP11Q6P575 273 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 OLFML1Q6UWY5 402 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 KYAT3Q6YP21 454 aaKnown RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 DPY19L3Q6ZPD9 716 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ERN2Q76MJ5 926 aaKnown RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 CLEC14AQ86T13 490 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ZNF548Q8NEK5 533 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 FAM174AQ8TBP5 190 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 IFI44Q8TCB0 444 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ASB12Q8WXK4 309 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 GRAMD1AQ96CP6 724 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 MED8Q96G25 268 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ATXN7L3BQ96GX2 97 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 DHTKD1Q96HY7 919 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 LENG8Q96PV6 779 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 NPY6RQ99463 290 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.25□□□□□ -1.41
VRK3-220ENST00000600259 TRIM62Q9BVG3 475 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 DUSP23Q9BVJ7 150 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 C1QTNF2Q9BXJ5 285 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 CALN1Q9BXU9 219 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SLC17A9Q9BYT1 436 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SCAND2PQ9GZW5 306 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 UBE2TQ9NPD8 197 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 THSD1Q9NS62 852 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 PIGVQ9NUD9 493 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 RMND1Q9NWS8 449 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 DDIT4Q9NX09 232 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 ARHGEF38Q9NXL2 777 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SALL4Q9UJQ4 1053 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SLC25A13Q9UJS0 675 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 VPS28Q9UK41 221 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SATB2Q9UPW6 733 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 FADS3Q9Y5Q0 445 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 SNX10Q9Y5X0 201 aa6.25□□□□□ -1.41
VRK3-220ENST00000600259 TP53BP1Q12888 1972 aaPredicted RBP6.25□□□□□ -1.41
VRK3-220ENST00000600259 BOD1L1Q8NFC6 3051 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 COL12A1Q99715 3063 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 CPED1A4D0V7 1026 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 A6NNZ2 444 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 KPNA3O00505 521 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 NTN3O00634 580 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 TPP1O14773 563 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 MED7O43513 233 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 AP1G1O43747 822 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 BNIP3LO60238 219 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 GCATO75600 419 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 LEFTY1O75610 366 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 GRAP2O75791 330 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 PCDH8O95206 1070 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 WISP1O95388 367 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 PRNPP04156 253 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ALPPL2P10696 532 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms