RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ARNTP27540 789 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 ACVRL1P37023 503 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 ALDH7A1P49419 539 aaKnown RBP14.7□□□□□ -0.06
VRK3-217ENST00000599538 LIMK2P53671 638 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 CCDC15Q0P6D6 951 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 HSF5Q4G112 596 aaPredicted RBP14.7□□□□□ -0.06
VRK3-217ENST00000599538 RFWD3Q6PCD5 774 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 ANKRD33Q7Z3H0 272 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 LINC00523Q86TU6 105 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 MTDHQ86UE4 582 aaKnown RBP14.7□□□□□ -0.06
VRK3-217ENST00000599538 SPNS2Q8IVW8 549 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 CFAP52Q8N1V2 620 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 ACMSDQ8TDX5 336 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 DIS3LQ8TF46 1054 aaKnown RBP14.7□□□□□ -0.06
VRK3-217ENST00000599538 RPRD1AQ96P16 312 aaPredicted RBP14.7□□□□□ -0.06
VRK3-217ENST00000599538 TRIM55Q9BYV6 548 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 PPARGC1AQ9UBK2 798 aaKnown RBP14.7□□□□□ -0.06
VRK3-217ENST00000599538 LAMA3Q16787 3333 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 COL4A6Q14031 1691 aa14.7□□□□□ -0.06
VRK3-217ENST00000599538 MAGEB16A2A368 324 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 PLIN3O60664 434 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 T-ENOLP0DO92 83 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 TARSP26639 723 aaKnown RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 GABRB3P28472 473 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 HNRNPH1P31943 449 aaKnown RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 PSEN1P49768 467 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 NDST2P52849 883 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 IRF9Q00978 393 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 OCRLQ01968 901 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 DSC2Q02487 901 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 MPP3Q13368 585 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 FASTKD1Q53R41 847 aaKnown RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 SLC8B1Q6J4K2 584 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 FAM117BQ6P1L5 589 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 PKN3Q6P5Z2 889 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 ZNF449Q6P9G9 518 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 RANBP10Q6VN20 620 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 PGBD5Q8N414 524 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 TMEM120AQ9BXJ8 343 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 SEZ6LQ9BYH1 1024 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 FBXO6Q9NRD1 293 aaPredicted RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 OLA1Q9NTK5 396 aaKnown RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 MTRRQ9UBK8 725 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 MARCOQ9UEW3 520 aaPredicted RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 ACTL7AQ9Y615 435 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 DRGXA6NNA5 263 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 PSMD3O43242 534 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 GLRA3O75311 464 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 CBX6O95503 412 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 MMP2P08253 660 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 KITP10721 976 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 ALDH3A1P30838 453 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 SLC6A4P31645 630 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 SPRP35270 261 aaPredicted RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 MAGEA12P43365 314 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 GEMP55040 296 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 WNT3AP56704 352 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 FRG1Q14331 258 aaKnown RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 PCLAFQ15004 111 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 TAF1BQ53T94 588 aaPredicted RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 PCID2Q5JVF3 399 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 CYB5D1Q6P9G0 228 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 KDELC1Q6UW63 502 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 ASRGL1Q7L266 308 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 ZNF354CQ86Y25 554 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 DENND6AQ8IWF6 608 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 SLC25A41Q8N5S1 370 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 PNPLA1Q8N8W4 532 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 OR52K2Q8NGK3 314 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 TMEM237Q96Q45 408 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 CLSTN3Q9BQT9 956 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 FSD1LQ9BXM9 530 aa14.69□□□□□ -0.06
VRK3-217ENST00000599538 UBE2OQ9C0C9 1292 aaKnown RBP14.69□□□□□ -0.06
VRK3-217ENST00000599538 ITM2AO43736 263 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 LYPLA1O75608 230 aaPredicted RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 NEBLO76041 1014 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 UNC5CO95185 931 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 VAPBO95292 243 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 PROCP04070 461 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ETFBP38117 255 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 CD86P42081 329 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 ELF3P78545 371 aaPredicted RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 ITKQ08881 620 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 CTBP1Q13363 440 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 HNRNPDQ14103 355 aaKnown RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 GRM3Q14832 879 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 SETDB1Q15047 1291 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 CNGA3Q16281 694 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 USP41Q3LFD5 358 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 KYAT3Q6YP21 454 aaKnown RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 RNF168Q8IYW5 571 aaPredicted RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 KLHL29Q96CT2 875 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 IGSF21Q96ID5 467 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 VPS39Q96JC1 886 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 TTLL2Q9BWV7 592 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 HEY2Q9UBP5 337 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 HAO1Q9UJM8 370 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 MIA3Q5JRA6 1907 aa14.68□□□□□ -0.06
VRK3-217ENST00000599538 SNNO75324 88 aaPredicted RBP14.68□□□□□ -0.06
VRK3-217ENST00000599538 DCTN3O75935 186 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms