RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SNAP91O60641 907 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 GP1BAP07359 652 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 TPM2P07951 284 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 ITGB7P26010 798 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 FLT3P36888 993 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 GSCP56915 257 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-211ENST00000597968 NOMO3P69849 1222 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 DNAJC3Q13217 504 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 ACAP1Q15027 740 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 COL28A1Q2UY09 1125 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 ZNF284Q2VY69 593 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 DPCR1Q3MIW9 517 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 TMEM259Q4ZIN3 620 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 HSP90AA4PQ58FG1 418 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 TCP11X2Q5H9J9 407 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 STRADAQ7RTN6 431 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 OR4C6Q8NH72 309 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 ARHGEF26Q96DR7 871 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 FEM1CQ96JP0 617 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 LENG8Q96PV6 779 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-211ENST00000597968 HEPHQ9BQS7 1158 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 OSBPL2Q9H1P3 480 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 GPR27Q9NS67 375 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 NCKIPSDQ9NZQ3 722 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 CACNA1GO43497 2377 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 A0A0D9SEW6 157 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 FAM149AA5PLN7 773 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 A6NNZ2 444 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 BNIP3LO60238 219 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 ZNF821O75541 412 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 ZMPSTE24O75844 475 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 CYP1A1P04798 512 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 TFE3P19532 575 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 MMP8P22894 467 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 RRM1P23921 792 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 L1CAMP32004 1257 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 GGCXP38435 758 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 PTPN9P43378 593 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 DUSP3P51452 185 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 HNRNPKP61978 463 aaKnown RBP eCLIP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 CDR2Q01850 454 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 GNA12Q03113 381 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 CARD16Q5EG05 197 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 HES3Q5TGS1 186 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 KYAT3Q6YP21 454 aaKnown RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 DPY19L3Q6ZPD9 716 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 TFAP2DQ7Z6R9 452 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 NOP9Q86U38 636 aaKnown RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 DCBLD1Q8N8Z6 715 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 FAM181AQ8N9Y4 354 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 ENOX1Q8TC92 643 aaKnown RBP13.89□□□□□ -0.19
TRIM28-211ENST00000597968 CASKIN2Q8WXE0 1202 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 BAP1Q92560 729 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 OSBPL1AQ9BXW6 950 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 NUP62CLQ9H1M0 184 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 MAGEH1Q9H213 219 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 ATP13A1Q9HD20 1204 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 MPP6Q9NZW5 540 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 CLCA2Q9UQC9 943 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 WASF2Q9Y6W5 498 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 ADAMTS20P59510 1910 aa13.89□□□□□ -0.19
TRIM28-211ENST00000597968 ZSCAN5CA6NGD5 496 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 K7ERQ8 282 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 CBX4O00257 560 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 PLK4O00444 970 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 PES1O00541 588 aaKnown RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 TOR1BO14657 336 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SLC31A1O15431 190 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 RRP8O43159 456 aaKnown RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SMAD6O43541 496 aaKnown RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 TSPAN6O43657 245 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SRGAP2O75044 1071 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 LEFTY1O75610 366 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 PCDH8O95206 1070 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 PNMA6AP0CW24 399 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 CKMT1AP12532 417 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 ADRB3P13945 408 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 RHOQP17081 205 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 DGKAP23743 735 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SDC4P31431 198 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 ADRA1BP35368 520 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 ABCG1P45844 678 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 TARDBPQ13148 414 aaKnown RBP eCLIP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 CCDC157Q569K6 752 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 ARSIQ5FYB1 569 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 ARTNQ5T4W7 220 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 MANEALQ5VSG8 457 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 FAM131BQ86XD5 332 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SLC25A45Q8N413 288 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 DENND6BQ8NEG7 585 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SNIP1Q8TAD8 396 aaKnown RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 NTAN1Q96AB6 310 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 ARRDC3Q96B67 414 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 GRAMD1AQ96CP6 724 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 CFAP57Q96MR6 1250 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SLC17A9Q9BYT1 436 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 TMEM248Q9NWD8 314 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 DONSONQ9NYP3 566 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 NLGN3Q9NZ94 848 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 OR12D3Q9UGF7 316 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms