RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CHADO15335 359 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 TBL1XO60907 577 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 CLDN11O75508 207 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 NFATC1O95644 943 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 IL4RP24394 825 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 MAPKAPK2P49137 400 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 CDH4P55283 916 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 KLF1Q13351 362 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 PDGFRLQ15198 375 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 C5orf22Q49AR2 442 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 PMS2CLQ68D20 193 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 NCBP2-AS2Q69YL0 99 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 TPGS1Q6ZTW0 290 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 BZW1Q7L1Q6 419 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 CHST9Q7L1S5 443 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 TFAP2DQ7Z6R9 452 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 CIR1Q86X95 450 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 ZNF683Q8IZ20 524 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 CFAP52Q8N1V2 620 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 LZTR1Q8N653 840 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 PQLC3Q8N755 202 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 RIN3Q8TB24 985 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 ATP2A3Q93084 1043 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 IGSF8Q969P0 613 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 HAUS1Q96CS2 278 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 TMA16Q96EY4 203 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 FRMD8P1Q9BZ68 369 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 HOMER3Q9NSC5 361 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 TMEM248Q9NWD8 314 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 EVLQ9UI08 416 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 NEU3Q9UQ49 428 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 HEY1Q9Y5J3 304 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 ATG2BQ96BY7 2078 aa12.34□□□□□ -0.43
SHKBP1-213ENST00000597325 TEP1Q99973 2627 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 THADAQ6YHU6 1953 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 A0A087WV48 116 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 TCRBV7S2A1N4TA0A589 114 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 WASH4PA8MWX3 477 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC188H7C350 402 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 APOC4-APOC2K7ER74 178 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 MCF2LO15068 1137 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 MFSD11O43934 449 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 ADH1CP00326 375 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 APOC2P02655 101 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 NR2C2P49116 596 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 IRAK1P51617 712 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 SGSHP51688 502 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 RPS24P62847 133 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 SRSF1Q07955 248 aaKnown RBP eCLIP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF177Q13360 481 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 CDH18Q13634 790 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 PAFAH1B3Q15102 231 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 ANO4Q32M45 955 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 ALFQ53S48 1182 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 C6orf118Q5T5N4 469 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 CARNMT1Q8N4J0 409 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 PLD5Q8N7P1 536 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 LSM14AQ8ND56 463 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 BHMTQ93088 406 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 HERPUD2Q9BSE4 406 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 AP1M1Q9BXS5 423 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 L2HGDHQ9H9P8 463 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 SPHK2Q9NRA0 654 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 POLR3BQ9NW08 1133 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 SLC8A2Q9UPR5 921 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 RAD54BQ9Y620 910 aa12.33□□□□□ -0.44
SHKBP1-213ENST00000597325 KIF26AQ9ULI4 1882 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CTAGE15A4D2H0 777 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 NEDD8-MDP1E9PL57 170 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 PDE2AO00408 941 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 PPP1R12AO14974 1030 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CNTN5O94779 1100 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 LUC7L3O95232 432 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 RHOCP08134 193 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CTAGE8P0CG41 777 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 PECAM1P16284 738 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 MX2P20592 715 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 OR1E1P30953 314 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 OTUD4Q01804 1114 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 GBE1Q04446 702 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 ADCY2Q08462 1091 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 NOMO1Q15155 1222 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 MPP7Q5T2T1 576 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF572Q7Z3I7 529 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 SETD3Q86TU7 594 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CTAGE6Q86UF2 777 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 NLRP14Q86W24 1093 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF354CQ86Y25 554 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CDKL3Q8IVW4 592 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 MFN1Q8IWA4 741 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CTAGE4Q8IX94 777 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 CPA6Q8N4T0 437 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF557Q8N988 423 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 ACTL9Q8TC94 416 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 ADAMTS14Q8WXS8 1223 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 MYEOVQ96EZ4 313 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 LRRC3BQ96PB8 259 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 FERMT1Q9BQL6 677 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 BBS2Q9BXC9 721 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms