RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 VPS28Q9UK41 221 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 STAP1Q9ULZ2 295 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 CABIN1Q9Y6J0 2220 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 KNL1Q8NG31 2342 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 COL5A1P20908 1838 aaPredicted RBP12.79□□□□□ -0.36
UPF1-203ENST00000594504 MCF2LO15068 1137 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 LATO43561 262 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 SDC3O75056 442 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 SERPING1P05155 500 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 CTSLP07711 333 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 TPM1P09493 284 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 SKILP12757 684 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 SRCP12931 536 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 JUPP14923 745 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 EPHA8P29322 1005 aaPredicted RBP12.79□□□□□ -0.36
UPF1-203ENST00000594504 TAS2R38P59533 333 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 STAT4Q14765 748 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 SOWAHCQ53LP3 525 aaPredicted RBP12.79□□□□□ -0.36
UPF1-203ENST00000594504 SLC45A4Q5BKX6 768 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 TTC39BQ5VTQ0 682 aaPredicted RBP12.79□□□□□ -0.36
UPF1-203ENST00000594504 AGBL4Q5VU57 503 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 HGSNATQ68CP4 663 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 NAPEPLDQ6IQ20 393 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 SH2D3CQ8N5H7 860 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 PDCD7Q8N8D1 485 aaKnown RBP12.79□□□□□ -0.36
UPF1-203ENST00000594504 MFSD2AQ8NA29 543 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 ARRDC3Q96B67 414 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 NPY6RQ99463 290 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 MYOCQ99972 504 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 TKTL2Q9H0I9 626 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 MUC3BQ9H195 1237 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 WDCPQ9H6R7 721 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 TMEM51Q9NW97 253 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 MPP6Q9NZW5 540 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 TMEM59LQ9UK28 342 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 WDFY3Q8IZQ1 3526 aa12.79□□□□□ -0.36
UPF1-203ENST00000594504 MYLKQ15746 1914 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 A0A0D9SEW6 157 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 DDX3XO00571 662 aaKnown RBP eCLIP12.78□□□□□ -0.36
UPF1-203ENST00000594504 SMAD6O43541 496 aaKnown RBP12.78□□□□□ -0.36
UPF1-203ENST00000594504 RNGTTO60942 597 aaKnown RBP12.78□□□□□ -0.36
UPF1-203ENST00000594504 RFPL3O75679 317 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 GZMAP12544 262 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 GLDCP23378 1020 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 RRM1P23921 792 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 HNRNPH3P31942 346 aaKnown RBP12.78□□□□□ -0.36
UPF1-203ENST00000594504 FLT3P36888 993 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 ARRB1P49407 418 aaPredicted RBP12.78□□□□□ -0.36
UPF1-203ENST00000594504 ACADVLP49748 655 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 SULT1E1P49888 294 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 VASPP50552 380 aaPredicted RBP12.78□□□□□ -0.36
UPF1-203ENST00000594504 CDH4P55283 916 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 OXCT1P55809 520 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 MTA1Q13330 715 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 INAVAQ3KP66 663 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 SLC25A52Q3SY17 297 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 C5orf22Q49AR2 442 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 FAM46CQ5VWP2 391 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 LINGO4Q6UY18 593 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 KANSL1Q7Z3B3 1105 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 VPS36Q86VN1 386 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 TMPRSS12Q86WS5 348 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 MCOLN2Q8IZK6 566 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 CHST14Q8NCH0 376 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 C3orf20Q8ND61 904 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 TSC1Q92574 1164 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 NT5C3BQ969T7 300 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 VCPIP1Q96JH7 1222 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 DCBLD2Q96PD2 775 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 TBCBQ99426 244 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 DNAJC7Q99615 494 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 METTL5Q9NRN9 209 aaKnown RBP12.78□□□□□ -0.36
UPF1-203ENST00000594504 ARHGEF38Q9NXL2 777 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 DKK4Q9UBT3 224 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 TBC1D30Q9Y2I9 924 aa12.78□□□□□ -0.36
UPF1-203ENST00000594504 C1QTNF3-AMACRE9PGA6 284 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 SLC31A1O15431 190 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 SLC7A4O43246 635 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 CLDN11O75508 207 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 ENDOD1O94919 500 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 F9P00740 461 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 RHOCP08134 193 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 KRT3P12035 628 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 PRLRP16471 622 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 CHRNA3P32297 505 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 RXRGP48443 463 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 CXCR3P49682 368 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 DEUP1Q05D60 604 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 TARDBPQ13148 414 aaKnown RBP eCLIP12.77□□□□□ -0.37
UPF1-203ENST00000594504 ARTNQ5T4W7 220 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 PIP5KL1Q5T9C9 394 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 TRNP1Q6NT89 227 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 DNAJC24Q6P3W2 148 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 DSG4Q86SJ6 1040 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 TRIM69Q86WT6 500 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 DRC7Q8IY82 874 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 ZNF683Q8IZ20 524 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 ATP11CQ8NB49 1132 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 OR7D4Q8NG98 312 aa12.77□□□□□ -0.37
UPF1-203ENST00000594504 OR8K1Q8NGG5 319 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms