RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 HELZP42694 1942 aaKnown RBP13.74□□□□□ -0.21
VMP1-217ENST00000593168 EP300Q09472 2414 aaPredicted RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 CHD5Q8TDI0 1954 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 TBL1XO60907 577 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 LUC7L3O95232 432 aaKnown RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 CCNB1P14635 433 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 TPSB2P20231 275 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 FSHRP23945 695 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 ETFBP38117 255 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 TNNT3P45378 269 aaPredicted RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 SGSHP51688 502 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 GNA12Q03113 381 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 USP4Q13107 963 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 SERINC3Q13530 473 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 TPSAB1Q15661 275 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 RNF43Q68DV7 783 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 ITPRIPL1Q6GPH6 555 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 TMC3Q7Z5M5 1100 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 RELL1Q8IUW5 271 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 SLC44A3Q8N4M1 653 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 CELF5Q8N6W0 485 aaKnown RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 MCUQ8NE86 351 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 ARHGEF2Q92974 986 aaKnown RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 OTUB2Q96DC9 234 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 GDAP1L1Q96MZ0 367 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 FRMD8Q9BZ67 464 aaPredicted RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 SEMA4AQ9H3S1 761 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 VIPAS39Q9H9C1 493 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 TBC1D17Q9HA65 648 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 KLHL8Q9P2G9 620 aaPredicted RBP13.73□□□□□ -0.21
VMP1-217ENST00000593168 EPS15L1Q9UBC2 864 aa13.73□□□□□ -0.21
VMP1-217ENST00000593168 COL4A3Q01955 1670 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 SLC9A3R1O14745 358 aaPredicted RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 SCAMP3O14828 347 aaKnown RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 EIF3HO15372 352 aaKnown RBP eCLIP13.72□□□□□ -0.21
VMP1-217ENST00000593168 ZBTB24O43167 697 aaPredicted RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 KDELR3O43731 214 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 CACNG3O60359 315 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 PRAMEF12O95522 483 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 PEX11BO96011 259 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 CYBBP04839 570 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 DCNP07585 359 aaKnown RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 RHOCP08134 193 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 ACVRL1P37023 503 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 IFNAR2P48551 515 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 RENBPP51606 427 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 CDK16Q00536 496 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 TNK2Q07912 1038 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 ZBTB17Q13105 803 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 ANKRD22Q5VYY1 191 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 CXorf57Q6NSI4 855 aaKnown RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 PPP1R21Q6ZMI0 780 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 DGLUCYQ7Z3D6 616 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 NPAS3Q8IXF0 933 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 TEX26Q8N6G2 289 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 DDI1Q8WTU0 396 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 NSMCE1Q8WV22 266 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 ING5Q8WYH8 240 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 ZNF599Q96NL3 588 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 ACE2Q9BYF1 805 aaPredicted RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 SP110Q9HB58 689 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 EIF2B3Q9NR50 452 aaKnown RBP13.72□□□□□ -0.21
VMP1-217ENST00000593168 GDE1Q9NZC3 331 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 DLGAP2Q9P1A6 1054 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 SHROOM3Q8TF72 1996 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 MIA3Q5JRA6 1907 aa13.72□□□□□ -0.21
VMP1-217ENST00000593168 TCRBV7S3A2A0A539 114 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 E7EVH7 732 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 H0Y626 953 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 J3KR12 359 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 PRAMEF11O60813 436 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 TMEM63AO94886 807 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 SP9P0CG40 484 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 SRFP11831 508 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 CD68P34810 354 aaPredicted RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 PMS2P54278 862 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 OXCT1P55809 520 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 SARNPP82979 210 aaKnown RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 FAXCQ5TGI0 409 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 MARC1Q5VT66 337 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 TRMT10CQ7L0Y3 403 aaKnown RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 CCDC117Q8IWD4 279 aaPredicted RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 KLHDC8BQ8IXV7 354 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 CARNMT1Q8N4J0 409 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 TAB3Q8N5C8 712 aaPredicted RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 CNTD1Q8N815 330 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 TSEN2Q8NCE0 465 aaKnown RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 TTC16Q8NEE8 873 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 ST13P5Q8NFI4 369 aaPredicted RBP13.71□□□□□ -0.21
VMP1-217ENST00000593168 OR7D4Q8NG98 312 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 OR52K2Q8NGK3 314 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 RIN3Q8TB24 985 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 FGF13Q92913 245 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 SMARCD2Q92925 531 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 AGAP3Q96P47 875 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 PPP1R2P1Q96PQ5 205 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 CEP41Q9BYV8 373 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 GBA3Q9H227 469 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 PDFQ9HBH1 243 aa13.71□□□□□ -0.21
VMP1-217ENST00000593168 RBM22Q9NW64 420 aaKnown RBP eCLIP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms