RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DENND5AQ6IQ26 1287 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 NET1Q7Z628 596 aaPredicted RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 ARHGAP39Q9C0H5 1083 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 BATF3Q9NR55 127 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 NDFIP2Q9NV92 336 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 SLC39A10Q9ULF5 831 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 ANKRD6Q9Y2G4 727 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 CDY1Q9Y6F8 540 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 SHROOM3Q8TF72 1996 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 KCNU1A8MYU2 1149 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 H2AFYO75367 372 aaKnown RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 GABRB3P28472 473 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 ADRA1AP35348 466 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 YWHAHQ04917 246 aaPredicted RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 SLC34A1Q06495 639 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 TRIM32Q13049 653 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 VWA5B1Q5TIE3 1220 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 AFMIDQ63HM1 303 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 CCDC117Q8IWD4 279 aaPredicted RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 CNTN4Q8IWV2 1026 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 ULK2Q8IYT8 1036 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 TMEM151AQ8N4L1 468 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 KLHDC9Q8NEP7 349 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 IPMKQ8NFU5 416 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 STMN2Q93045 179 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 PPP1R2P1Q96PQ5 205 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 THTPAQ9BU02 230 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 C1QTNF1Q9BXJ1 281 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 OXCT2Q9BYC2 517 aaPredicted RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 CDH19Q9H159 772 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 OXSMQ9NWU1 459 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 STX18Q9P2W9 335 aaKnown RBP10.24□□□□□ -0.77
VPS53-220ENST00000576149 MID2Q9UJV3 735 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 PCDHB8Q9UN66 801 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 NLRC5Q86WI3 1866 aa10.24□□□□□ -0.77
VPS53-220ENST00000576149 CCDC78A2IDD5 438 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 CARNS1A5YM72 827 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TBX10O75333 385 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 HSPA4LO95757 839 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 AHSGP02765 367 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 APOA4P06727 396 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 VHLP40337 213 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 FLT3LGP49771 235 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TUBP50607 506 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 GEMP55040 296 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 FCGRTP55899 365 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 POU6F1Q14863 301 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 CCDC6Q16204 474 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TRMT5Q32P41 509 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 FAM26DQ5JW98 314 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 CCSAPQ6IQ19 270 aaPredicted RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 EPGNQ6UW88 154 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 RAPH1Q70E73 1250 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 LCA5Q86VQ0 697 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 ZNF781Q8N8C0 355 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 RDH11Q8TC12 318 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 CLPTM1LQ96KA5 538 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 FICDQ9BVA6 458 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 GATA5Q9BWX5 397 aaPredicted RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 NMUR1Q9HB89 426 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 SLC7A8Q9UHI5 535 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TLK1Q9UKI8 766 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 PTPRDP23468 1912 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 PATJQ8NI35 1801 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TDRD15B5MCY1 1934 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 A0A1W2PQH9 124 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 E9PAM4 449 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 LUC7L3O95232 432 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 HLA-DQB2P05538 268 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 ATP6V1C1P21283 382 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 ARCN1P48444 511 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 MXRA7P84157 204 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 NRG1Q02297 640 aaPredicted RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 CACNB2Q08289 660 aaPredicted RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 USP4Q13107 963 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 ITGA7Q13683 1181 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 USP10Q14694 798 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 NAA25Q14CX7 972 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 UGP2Q16851 508 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TRIM71Q2Q1W2 868 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 SNX30Q5VWJ9 437 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TIGD7Q6NT04 549 aaPredicted RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 POTEHQ6S545 545 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 ZYG11AQ6WRX3 759 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 LRRC49Q8IUZ0 686 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 RTL3Q8N8U3 475 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 PPHLN1Q8NEY8 458 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 PTCD2Q8WV60 388 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 NRG4Q8WWG1 115 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 PANX3Q96QZ0 392 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 ACE2Q9BYF1 805 aaPredicted RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 IRF2BPLQ9H1B7 796 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 TASP1Q9H6P5 420 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 COG4Q9H9E3 785 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 MRM3Q9HC36 420 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 ENTPD7Q9NQZ7 604 aa10.23□□□□□ -0.77
VPS53-220ENST00000576149 RBM22Q9NW64 420 aaKnown RBP eCLIP10.23□□□□□ -0.77
VPS53-220ENST00000576149 CPSF2Q9P2I0 782 aaKnown RBP10.23□□□□□ -0.77
VPS53-220ENST00000576149 NUDT5Q9UKK9 219 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms