RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MSH2P43246 934 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 PGFP49763 221 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 CLCN4P51793 760 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 WDR4P57081 412 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 PPP2R2AP63151 447 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 SMAD3P84022 425 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 SLC20A2Q08357 652 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 CDH17Q12864 832 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 SERINC3Q13530 473 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 MPPE1Q53F39 396 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 INO80DQ53TQ3 878 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 TNFAIP8L3Q5GJ75 292 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 SPANXN3Q5MJ09 141 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 ANKRD22Q5VYY1 191 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 NLRP9Q7RTR0 991 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 TMCO2Q7Z6W1 182 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 DENND1CQ8IV53 801 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 FAM217AQ8IXS0 508 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 LGI2Q8N0V4 545 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 NPWQ8N729 165 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 DNAAF3Q8N9W5 541 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 HJURPQ8NCD3 748 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 GSDMBQ8TAX9 411 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 FAM174AQ8TBP5 190 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 USP13Q92995 863 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 CENPTQ96BT3 561 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 TLCD1Q96CP7 247 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 TMA16Q96EY4 203 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 STAMBPL1Q96FJ0 436 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 C9orf72Q96LT7 481 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 AGAP3Q96P47 875 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 SRPK1Q96SB4 655 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 MAGEB5Q9BZ81 275 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 POLR1EQ9GZS1 481 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 ATXN3LQ9H3M9 355 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 TASP1Q9H6P5 420 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 C10orf88Q9H8K7 445 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 SSU72Q9NP77 194 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 TMPRSS4Q9NRS4 437 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 RBM22Q9NW64 420 aaKnown RBP eCLIP8.12□□□□□ -1.116e-8■■■■■ 33.4
VPS39-213ENST00000570062 PSMC3IPQ9P2W1 217 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 SEPT3Q9UH03 358 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 ZNF180Q9UJW8 692 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 ARHGAP26Q9UNA1 814 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 NOVA2Q9UNW9 492 aaKnown RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 NEU3Q9UQ49 428 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 FNDC1Q4ZHG4 1894 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 GOLGA8MH3BSY2 632 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 KCNK1O00180 336 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PRAMEF11O60813 436 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 FAM155BO75949 473 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 KRT37O76014 449 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 KRT38O76015 456 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 LUC7L3O95232 432 aaKnown RBP8.11□□□□□ -1.11
VPS39-213ENST00000570062 PAPLNO95428 1278 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 CKMP06732 381 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 RHOCP08134 193 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 INHBAP08476 426 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 TIMP2P16035 220 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PAMP19021 973 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PRKCHP24723 683 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PSMB4P28070 264 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 AVPR1AP37288 418 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 HADHAP40939 763 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ELK3P41970 407 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 MAPK8P45983 427 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ERVFC1P60507 584 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 GNA12Q03113 381 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 NSUN2Q08J23 767 aaKnown RBP eCLIP8.11□□□□□ -1.11
VPS39-213ENST00000570062 GPM6BQ13491 265 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 FNBP1LQ5T0N5 605 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PLPP4Q5VZY2 271 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 KCTD11Q693B1 232 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 RETSATQ6NUM9 610 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 LYPD8Q6UX82 237 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 C14orf80Q86SX3 495 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PRUNE1Q86TP1 453 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 CAND1Q86VP6 1230 aaKnown RBP8.11□□□□□ -1.11
VPS39-213ENST00000570062 SLC26A11Q86WA9 606 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 LRRC6Q86X45 466 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ZNF354CQ86Y25 554 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 LMNTD2Q8IXW0 634 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 AUTS2Q8WXX7 1259 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 PEX13Q92968 403 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 IGSF8Q969P0 613 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ACDQ96AP0 544 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ARL8AQ96BM9 186 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 CELF6Q96J87 481 aaKnown RBP8.11□□□□□ -1.11
VPS39-213ENST00000570062 SIGLEC10Q96LC7 697 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 FSD1LQ9BXM9 530 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 KIF9Q9HAQ2 790 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 ARNT2Q9HBZ2 717 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 MRM3Q9HC36 420 aaKnown RBP8.11□□□□□ -1.11
VPS39-213ENST00000570062 TRPC7Q9HCX4 862 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 CASS4Q9NQ75 786 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 DZANK1Q9NVP4 752 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 MPP6Q9NZW5 540 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 TXNDC16Q9P2K2 825 aa8.11□□□□□ -1.11
VPS39-213ENST00000570062 AGO1Q9UL18 857 aaKnown RBP8.11□□□□□ -1.11
VPS39-213ENST00000570062 SMG5Q9UPR3 1016 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms