RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ITPR1Q14643 2758 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 LOC400499M0QZD8 3231 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 A0A1W2PQU0 124 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 SLC31A1O15431 190 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 RFPL3O75679 317 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ZMPSTE24O75844 475 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 MMP8P22894 467 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ACADVLP49748 655 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 KLK7P49862 253 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ATP11AP98196 1134 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 FMO1Q01740 532 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CDR2Q01850 454 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 SLC20A2Q08357 652 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CYP4F3Q08477 520 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CDKAL1Q5VV42 579 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 RETSATQ6NUM9 610 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CLEC17AQ6ZS10 378 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ERN2Q76MJ5 926 aaKnown RBP16.42■□□□□ 0.22
CLN3-229ENST00000567963 KLK6Q92876 244 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 HDAC8Q9BY41 377 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 LMBRD1Q9NUN5 540 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 RAXQ9Y2V3 346 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ZFYVE26Q68DK2 2539 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ARID1BQ8NFD5 2236 aaPredicted RBP16.42■□□□□ 0.22
CLN3-229ENST00000567963 KNTC1P50748 2209 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 LEFTY1O75610 366 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CHRNB2P17787 502 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 RECQLP46063 649 aaPredicted RBP16.42■□□□□ 0.22
CLN3-229ENST00000567963 SERPINH1P50454 418 aaKnown RBP16.42■□□□□ 0.22
CLN3-229ENST00000567963 JAM2P57087 298 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 POLR2FP61218 127 aaKnown RBP16.42■□□□□ 0.22
CLN3-229ENST00000567963 ARF5P84085 180 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 GNA12Q03113 381 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 KRT31Q15323 416 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ZNF284Q2VY69 593 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CCDC14Q49A88 953 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 RAB6CQ53S08 254 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 C19orf48Q6RUI8 117 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 HORMAD1Q86X24 394 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 GRIN3AQ8TCU5 1115 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 PPP1R16AQ96I34 528 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 CEP44Q9C0F1 390 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 RAB6CQ9H0N0 254 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 ATP13A1Q9HD20 1204 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 OR12D3Q9UGF7 316 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 WASF2Q9Y6W5 498 aa16.42■□□□□ 0.22
CLN3-229ENST00000567963 THEGLP0DJG4 465 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 JUPP14923 745 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 PRLRP16471 622 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 ADRA1BP35368 520 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 SOX5P35711 763 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 NRG1Q02297 640 aaPredicted RBP16.41■□□□□ 0.22
CLN3-229ENST00000567963 CDO1Q16878 200 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 C15orf59Q2T9L4 293 aaPredicted RBP16.41■□□□□ 0.22
CLN3-229ENST00000567963 ARL13BQ3SXY8 428 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 DRC7Q8IY82 874 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 PCDH20Q8N6Y1 951 aaKnown RBP16.41■□□□□ 0.22
CLN3-229ENST00000567963 SLC30A5Q8TAD4 765 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 RXFP2Q8WXD0 754 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 MYOCQ99972 504 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 NLRC4Q9NPP4 1024 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 FAM207AQ9NSI2 230 aaPredicted RBP16.41■□□□□ 0.22
CLN3-229ENST00000567963 ZFR2Q9UPR6 939 aaKnown RBP16.41■□□□□ 0.22
CLN3-229ENST00000567963 ACACAQ13085 2346 aa16.41■□□□□ 0.22
CLN3-229ENST00000567963 CXorf51AA0A1B0GTR3 108 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 EPHB6O15197 1021 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 SDC3O75056 442 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 PCDH8O95206 1070 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 CD160O95971 181 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 TPM2P07951 284 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 UNGP13051 313 aaPredicted RBP16.4■□□□□ 0.22
CLN3-229ENST00000567963 CKMT2P17540 419 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 HNRNPA2B1P22626 353 aaKnown RBP16.4■□□□□ 0.22
CLN3-229ENST00000567963 SDC4P31431 198 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 HNF1BP35680 557 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 CLDN6P56747 220 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 CARD16Q5EG05 197 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 MANEALQ5VSG8 457 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 PHLDB2Q86SQ0 1253 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 SLC25A45Q8N413 288 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 JOSD2Q8TAC2 188 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 GPT2Q8TD30 523 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 HNRNPLLQ8WVV9 542 aaKnown RBP16.4■□□□□ 0.22
CLN3-229ENST00000567963 HEPHQ9BQS7 1158 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 OSBPL2Q9H1P3 480 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 RETREG1Q9H6L5 497 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 FZD3Q9NPG1 666 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 NDFIP2Q9NV92 336 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 FANCLQ9NW38 375 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 ACTL7AQ9Y615 435 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 APC2O95996 2303 aa16.4■□□□□ 0.22
CLN3-229ENST00000567963 CACNA1GO43497 2377 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 CHD5Q8TDI0 1954 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 C2CD4BA6NLJ0 364 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 ADRB3P13945 408 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 HOXB3P14651 431 aaPredicted RBP16.39■□□□□ 0.21
CLN3-229ENST00000567963 ITGB7P26010 798 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 AKT2P31751 481 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 PTPN9P43378 593 aa16.39■□□□□ 0.21
CLN3-229ENST00000567963 DNA2P51530 1060 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms