RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 STK19P49842 368 aaPredicted RBP13.73□□□□□ -0.21
CLK3-218ENST00000566926 CLCN6P51797 869 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 TERF1P54274 439 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 ELAVL3Q14576 367 aaKnown RBP13.73□□□□□ -0.21
CLK3-218ENST00000566926 PUM1Q14671 1186 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLK3-218ENST00000566926 RAB6CQ53S08 254 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 C9orf64Q5T6V5 341 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 MANEALQ5VSG8 457 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 RETSATQ6NUM9 610 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 USP30Q70CQ3 517 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 ARMCX6Q7L4S7 300 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 POLNQ7Z5Q5 900 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 RHOT1Q8IXI2 618 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 SH2D3CQ8N5H7 860 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 CCDC185Q8N715 623 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 OR52K2Q8NGK3 314 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 OR8D1Q8WZ84 308 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 PTPRN2Q92932 1015 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 NAP1L3Q99457 506 aaPredicted RBP13.73□□□□□ -0.21
CLK3-218ENST00000566926 EPAS1Q99814 870 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 NUSAP1Q9BXS6 441 aaKnown RBP13.73□□□□□ -0.21
CLK3-218ENST00000566926 BTBD1Q9H0C5 482 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 RAB6CQ9H0N0 254 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 SGK2Q9HBY8 427 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 TMEM248Q9NWD8 314 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 SUSD2Q9UGT4 822 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 EVLQ9UI08 416 aaPredicted RBP13.73□□□□□ -0.21
CLK3-218ENST00000566926 FZD10Q9ULW2 581 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 HS3ST2Q9Y278 367 aa13.73□□□□□ -0.21
CLK3-218ENST00000566926 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.73□□□□□ -0.21
CLK3-218ENST00000566926 ADAMTS9Q9P2N4 1935 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 ALOX15BO15296 676 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 LRIG2O94898 1065 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 GNSP15586 552 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 PCK1P35558 622 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 PAFAH1B1P43034 410 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 PTGER3P43115 390 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 GEMIN4P57678 1058 aaKnown RBP13.72□□□□□ -0.21
CLK3-218ENST00000566926 GNA12Q03113 381 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 SF3A2Q15428 464 aaKnown RBP13.72□□□□□ -0.21
CLK3-218ENST00000566926 DLG2Q15700 870 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 CST6Q15828 149 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 CCDC6Q16204 474 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 HADHQ16836 314 aaKnown RBP13.72□□□□□ -0.21
CLK3-218ENST00000566926 DUOXA1Q1HG43 343 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 RSPO4Q2I0M5 234 aaPredicted RBP13.72□□□□□ -0.21
CLK3-218ENST00000566926 CCDC181Q5TID7 509 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 FAM46CQ5VWP2 391 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 CACUL1Q86Y37 369 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 RGL4Q8IZJ4 473 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 ATP11CQ8NB49 1132 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 GANCQ8TET4 914 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 HSPA12BQ96MM6 686 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 SPON2Q9BUD6 331 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 GPR174Q9BXC1 333 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 MAGEH1Q9H213 219 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 PABPC3Q9H361 631 aaKnown RBP13.72□□□□□ -0.21
CLK3-218ENST00000566926 CATSPERBQ9H7T0 1116 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 ATP13A1Q9HD20 1204 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 VPS51Q9UID3 782 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 PILRBQ9UKJ0 227 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 TTC7AQ9ULT0 858 aaPredicted RBP13.72□□□□□ -0.21
CLK3-218ENST00000566926 HPCAL4Q9UM19 191 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 PCDHA3Q9Y5H8 950 aa13.72□□□□□ -0.21
CLK3-218ENST00000566926 A0A0D9SEW6 157 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 TMEM110-MUSTN1A8MSY1 372 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 METTL12A8MUP2 240 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 MEI4A8MW99 385 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 C1QTNF3-AMACRE9PGA6 284 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 KCNK3O14649 394 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 FGF10O15520 208 aaPredicted RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 SLU7O95391 586 aaKnown RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 KRT7P08729 469 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 C5AR1P21730 350 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 ITPKAP23677 461 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 EPHB2P29323 1055 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 CETN2P41208 172 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 ZNF135P52742 658 aaPredicted RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 LIMK1P53667 647 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 RWDD2BP57060 319 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 OGDHQ02218 1023 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 ERMARDQ5T6L9 678 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 PEAR1Q5VY43 1037 aaPredicted RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 IL31Q6EBC2 164 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 FAM124AQ86V42 546 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 PSTKQ8IV42 348 aaKnown RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 MMAAQ8IVH4 418 aaKnown RBP13.71□□□□□ -0.21
CLK3-218ENST00000566926 SLC41A1Q8IVJ1 513 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 STK40Q8N2I9 435 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 DEFB119Q8N690 84 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 FRS2Q8WU20 508 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 FAM129BQ96TA1 746 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 PSMB7Q99436 277 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 OMDQ99983 421 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 RTKNQ9BST9 563 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 MTG2Q9H4K7 406 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 CD93Q9NPY3 652 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 FBXL12Q9NXK8 326 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 DLL3Q9NYJ7 618 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms