RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FAM182AQ5T1J6 154 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 AADACL2Q6P093 401 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 NPNTQ6UXI9 565 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 MMAAQ8IVH4 418 aaKnown RBP19.92■□□□□ 0.78
CLN3-225ENST00000566824 TXLNBQ8N3L3 684 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 LZTR1Q8N653 840 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 GAB3Q8WWW8 586 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 SIPA1Q96FS4 1042 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 CALR3Q96L12 384 aaKnown RBP19.92■□□□□ 0.78
CLN3-225ENST00000566824 TM6SF2Q9BZW4 377 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 LHX3Q9UBR4 397 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 IPO11Q9UI26 975 aaKnown RBP19.92■□□□□ 0.78
CLN3-225ENST00000566824 CYP8B1Q9UNU6 501 aa19.92■□□□□ 0.78
CLN3-225ENST00000566824 ZFHX2Q9C0A1 2572 aaPredicted RBP19.91■□□□□ 0.78
CLN3-225ENST00000566824 PLK4O00444 970 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 DDX3YO15523 660 aaKnown RBP19.91■□□□□ 0.78
CLN3-225ENST00000566824 MAFKO60675 156 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 RPP40O75818 363 aaKnown RBP19.91■□□□□ 0.78
CLN3-225ENST00000566824 PEX11BO96011 259 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 GKP32189 559 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 PSMD8P48556 350 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 DNA2P51530 1060 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 CLCN6P51797 869 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 DYNLT1P63172 113 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 LPAL2Q16609 132 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 ATXN7L2Q5T6C5 722 aaPredicted RBP19.91■□□□□ 0.78
CLN3-225ENST00000566824 SLC9A4Q6AI14 798 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 DPY19L3Q6ZPD9 716 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 ZNF662Q6ZS27 426 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 RFX6Q8HWS3 928 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 RNF10Q8N5U6 811 aaKnown RBP19.91■□□□□ 0.78
CLN3-225ENST00000566824 OR6K2Q8NGY2 324 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 PRCCQ92733 491 aaPredicted RBP19.91■□□□□ 0.78
CLN3-225ENST00000566824 TSGA10Q9BZW7 698 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 DONSONQ9NYP3 566 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 SERGEFQ9UGK8 458 aa19.91■□□□□ 0.78
CLN3-225ENST00000566824 IGHV1OR15-9A0A0B4J2B8 117 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 ZNF487B1APH4 448 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 MID1O15344 667 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 KRT86O43790 486 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 TPMTP51580 245 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 IFI16Q16666 785 aaKnown RBP19.9■□□□□ 0.78
CLN3-225ENST00000566824 POM121L1PQ3SYA9 428 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 KAZNQ674X7 775 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 ZNF776Q68DI1 518 aaPredicted RBP19.9■□□□□ 0.78
CLN3-225ENST00000566824 PEX26Q7Z412 305 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 KBTBD6Q86V97 674 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 ZNF419Q96HQ0 510 aaPredicted RBP19.9■□□□□ 0.78
CLN3-225ENST00000566824 CEP44Q9C0F1 390 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 ITM2CQ9NQX7 267 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 DTLQ9NZJ0 730 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 USP36Q9P275 1121 aaKnown RBP19.9■□□□□ 0.78
CLN3-225ENST00000566824 UBA2Q9UBT2 640 aaPredicted RBP19.9■□□□□ 0.78
CLN3-225ENST00000566824 AMFRQ9UKV5 643 aa19.9■□□□□ 0.78
CLN3-225ENST00000566824 ANKRD36A6QL64 1941 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 hCG_1818297A0A087WSY0 165 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 CXorf51AA0A1B0GTR3 108 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 ZSCAN5CA6NGD5 496 aaPredicted RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 MCF2LO15068 1137 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 MUSKO15146 869 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 NRDCO43847 1150 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 GJB3O75712 270 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 ZRANB2O95218 330 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLN3-225ENST00000566824 PYGMP11217 842 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 RGRP47804 291 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 IL10RBQ08334 325 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 GALNT2Q10471 571 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 ELAVL3Q14576 367 aaKnown RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 CST6Q15828 149 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 USP39Q53GS9 565 aaKnown RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 CARD16Q5EG05 197 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 B4GALNT4Q76KP1 1039 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 FAM124AQ86V42 546 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 VSIG1Q86XK7 387 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 REXO1L1PQ8IX06 675 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 RCOR2Q8IZ40 523 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 AADATQ8N5Z0 425 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 PCDH20Q8N6Y1 951 aaKnown RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 EXD1Q8NHP7 514 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 OR8D1Q8WZ84 308 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 EXOC2Q96KP1 924 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 NSMCE3Q96MG7 304 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 HEMGNQ9BXL5 484 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 IRF2BPLQ9H1B7 796 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 PABPC3Q9H361 631 aaKnown RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 SP110Q9HB58 689 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 SAE1Q9UBE0 346 aaPredicted RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 PPM1HQ9ULR3 514 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 PYCARDQ9ULZ3 195 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 ARIH1Q9Y4X5 557 aaPredicted RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 WASF2Q9Y6W5 498 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 GON4LQ3T8J9 2241 aa19.89■□□□□ 0.77
CLN3-225ENST00000566824 TNRC6BQ9UPQ9 1833 aaKnown RBP19.89■□□□□ 0.77
CLN3-225ENST00000566824 USP34Q70CQ2 3546 aa19.88■□□□□ 0.77
CLN3-225ENST00000566824 APOL1O14791 398 aa19.88■□□□□ 0.77
CLN3-225ENST00000566824 INSIG1O15503 277 aa19.88■□□□□ 0.77
CLN3-225ENST00000566824 IL1BP01584 269 aa19.88■□□□□ 0.77
CLN3-225ENST00000566824 CHRNA3P32297 505 aa19.88■□□□□ 0.77
CLN3-225ENST00000566824 SLC8A1P32418 973 aa19.88■□□□□ 0.77
CLN3-225ENST00000566824 SERPINB6P35237 376 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms