RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CHCHD4Q8N4Q1 142 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 NTAN1Q96AB6 310 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 CNPY3Q9BT09 278 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 CEP44Q9C0F1 390 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 TMEM248Q9NWD8 314 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 TAS2R14Q9NYV8 317 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 A0A1W2PQC6 194 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 SYCE3A1L190 88 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 C10orf142B7Z368 130 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 LATO43561 262 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 CBFA2T3O75081 653 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 CCT8P50990 548 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 TPM4P67936 248 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 ARF5P84085 180 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 ST3GAL2Q16842 350 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 CARD16Q5EG05 197 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 EFHC2Q5JST6 749 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 SFMBT2Q5VUG0 894 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 PPP1R2P3Q6NXS1 205 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 NLRP14Q86W24 1093 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 PYROXD2Q8N2H3 581 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 PCDH20Q8N6Y1 951 aaKnown RBP21.16■□□□□ 0.98
CLN3-219ENST00000565778 PNPLA1Q8N8W4 532 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 GRIN3AQ8TCU5 1115 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 ARHGEF2Q92974 986 aaKnown RBP21.16■□□□□ 0.98
CLN3-219ENST00000565778 ARRDC3Q96B67 414 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 VCPIP1Q96JH7 1222 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 FUCA2Q9BTY2 467 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 MAGEH1Q9H213 219 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 HAUS4Q9H6D7 363 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 PREBQ9HCU5 417 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 ARHGAP20Q9P2F6 1191 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 APOBEC2Q9Y235 224 aaKnown RBP21.16■□□□□ 0.98
CLN3-219ENST00000565778 FCF1Q9Y324 198 aaKnown RBP21.16■□□□□ 0.98
CLN3-219ENST00000565778 ACTL7AQ9Y615 435 aa21.16■□□□□ 0.98
CLN3-219ENST00000565778 A0A1B0GTH6 734 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 A0A1W2PR77 199 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 RNGTTO60942 597 aaKnown RBP21.15■□□□□ 0.98
CLN3-219ENST00000565778 ZNF821O75541 412 aaPredicted RBP21.15■□□□□ 0.98
CLN3-219ENST00000565778 LEFTY1O75610 366 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 EPHB2P29323 1055 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 L1CAMP32004 1257 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 NUDT1P36639 197 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 IL9RQ01113 521 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 STAT4Q14765 748 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 NR1I3Q14994 352 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 POLD3Q15054 466 aaPredicted RBP21.15■□□□□ 0.98
CLN3-219ENST00000565778 PPP1R15BQ5SWA1 713 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 NAPEPLDQ6IQ20 393 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 TRIM69Q86WT6 500 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 ZNF354CQ86Y25 554 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 ELF4Q99607 663 aaPredicted RBP21.15■□□□□ 0.98
CLN3-219ENST00000565778 CDC6Q99741 560 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 HEPHQ9BQS7 1158 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 SYT11Q9BT88 431 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 GDF3Q9NR23 364 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 PARVAQ9NVD7 372 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 AIPL1Q9NZN9 384 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 DMTF1Q9Y222 760 aa21.15■□□□□ 0.98
CLN3-219ENST00000565778 TLR4O00206 839 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 CREB3O43889 395 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 RAMP2O60895 175 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 FTH1P19P0C7X4 201 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 GEMIN4P57678 1058 aaKnown RBP21.14■□□□□ 0.97
CLN3-219ENST00000565778 TAS2R38P59533 333 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 KLHL30Q0D2K2 578 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 SCAPQ12770 1279 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 KLHL40Q2TBA0 621 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 PIP5KL1Q5T9C9 394 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 LEKR1Q6ZMV7 388 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 ERN2Q76MJ5 926 aaKnown RBP21.14■□□□□ 0.97
CLN3-219ENST00000565778 GLRX5Q86SX6 157 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 RYBPQ8N488 228 aaPredicted RBP21.14■□□□□ 0.97
CLN3-219ENST00000565778 MFSD2AQ8NA29 543 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 PPP1R16AQ96I34 528 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 FZD10Q9ULW2 581 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 BTBD3Q9Y2F9 522 aa21.14■□□□□ 0.97
CLN3-219ENST00000565778 A0A1B0GTQ1 180 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 C1QTNF9BB2RNN3 333 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 RNF103O00237 685 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 PCDHGA12O60330 932 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 PCDH8O95206 1070 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 CD160O95971 181 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 FTLP02792 175 aaPredicted RBP21.13■□□□□ 0.97
CLN3-219ENST00000565778 C1QTNF9P0C862 333 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 GRK6P43250 576 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 MAMLD1Q13495 774 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 SETMARQ53H47 684 aaPredicted RBP21.13■□□□□ 0.97
CLN3-219ENST00000565778 NEK5Q6P3R8 708 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 ZNF571Q7Z3V5 609 aaPredicted RBP21.13■□□□□ 0.97
CLN3-219ENST00000565778 TMC6Q7Z403 805 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 KLK6Q92876 244 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 ISG20Q96AZ6 181 aaKnown RBP21.13■□□□□ 0.97
CLN3-219ENST00000565778 HDAC8Q9BY41 377 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 EDEM3Q9BZQ6 932 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 TM6SF2Q9BZW4 377 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 CBX8Q9HC52 389 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 HECAQ9UBI9 543 aaPredicted RBP21.13■□□□□ 0.97
CLN3-219ENST00000565778 KLK13Q9UKR3 277 aa21.13■□□□□ 0.97
CLN3-219ENST00000565778 NEUROG3Q9Y4Z2 214 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms