RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 A0A1W2PP55 124 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 PATE3B3GLJ2 98 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 NPC1O15118 1278 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 SPINT1O43278 529 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 MOCS3O95396 460 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 TNNT1P13805 278 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ITIH2P19823 946 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 CYLC1P35663 651 aaPredicted RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 VAV2P52735 878 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 TAS2R38P59533 333 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 GBE1Q04446 702 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ANKRD20A8PQ5CZ79 823 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ACBD5Q5T8D3 534 aaPredicted RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 IL31Q6EBC2 164 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 MFSD7Q6UXD7 560 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 PRR23BQ6ZRT6 265 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 NUDT18Q6ZVK8 323 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ARMCX6Q7L4S7 300 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 METTL3Q86U44 580 aaKnown RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 FAM124AQ86V42 546 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ZSWIM9Q86XI8 627 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 PGBD3Q8N328 593 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 PLD5Q8N7P1 536 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ATP11CQ8NB49 1132 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 CCDC26Q8TAB7 109 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ALG3Q92685 438 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 RNF25Q96BH1 459 aaPredicted RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 SIPA1Q96FS4 1042 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 ZC3H10Q96K80 434 aaKnown RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 TM6SF2Q9BZW4 377 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 PABPC3Q9H361 631 aaKnown RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 C6orf106Q9H6K1 298 aaPredicted RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 FSCN3Q9NQT6 498 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 BCCIPQ9P287 314 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS35-206ENST00000565228 PACSIN2Q9UNF0 486 aaPredicted RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 CHD6Q8TD26 2715 aa9.4□□□□□ -0.9
VPS35-206ENST00000565228 TARSL2A2RTX5 802 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 GOLGA6L3A6NEY3 463 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 BTNL10A8MVZ5 291 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 WNT9AO14904 365 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 MCF2LO15068 1137 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 FGF10O15520 208 aaPredicted RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 BNIP3LO60238 219 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SYNCRIPO60506 623 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 MAFKO60675 156 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 PRAMEF11O60813 436 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 TMCC1O94876 653 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 LMNAP02545 664 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 KRT10P13645 584 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 MAOBP27338 520 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SSR1P43307 286 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 NOP2P46087 812 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 PSMD8P48556 350 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 PEX5P50542 639 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 NDST2P52849 883 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 NRLP54845 237 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 OXCT1P55809 520 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SULT2A1Q06520 285 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SLC10A7Q0GE19 358 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 PAFAH1B3Q15102 231 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 CST6Q15828 149 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 ACCSLQ4AC99 568 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 DCAF12L1Q5VU92 463 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 TCEAL6Q6IPX3 200 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SDE2Q6IQ49 451 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 C11orf63Q6NUN7 778 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 ZNF557Q8N988 423 aaPredicted RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 TCEAL3Q969E4 200 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 NKD2Q969F2 451 aaPredicted RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 TOE1Q96GM8 510 aaKnown RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 PDLIM2Q96JY6 352 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 EXOC2Q96KP1 924 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 RNF157Q96PX1 679 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 C2orf49Q9BVC5 232 aaPredicted RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 NEUROG2Q9H2A3 272 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 CATSPERBQ9H7T0 1116 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SAE1Q9UBE0 346 aaPredicted RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 SUN2Q9UH99 717 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 SLC25A13Q9UJS0 675 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 CACNA1EQ15878 2313 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 TP53BP1Q12888 1972 aaPredicted RBP9.39□□□□□ -0.91
VPS35-206ENST00000565228 CEP250Q9BV73 2442 aa9.39□□□□□ -0.91
VPS35-206ENST00000565228 BAHCC1Q9P281 2608 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 H3BRJ5 948 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 DFFAO00273 331 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 DDX3YO15523 660 aaKnown RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 GFRA3O60609 400 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 ALDH1A2O94788 518 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 EPN2O95208 641 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PECAM1P16284 738 aaPredicted RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 ITPKAP23677 461 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 CHRNA3P32297 505 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 SLC8A1P32418 973 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 HTR7P34969 479 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 CNR2P34972 360 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 CDKN2BP42772 138 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 CCNHP51946 323 aaPredicted RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 YBEYP58557 167 aaPredicted RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 ST8SIA6P61647 398 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PPP2CBP62714 309 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms