RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PLEKHG6Q3KR16 790 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 TMCO4Q5TGY1 634 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 GPR153Q6NV75 609 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 PGBD5Q8N414 524 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 NAT16Q8N8M0 369 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 NSMCE1Q8WV22 266 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 EXOC4Q96A65 974 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 RPP25Q9BUL9 199 aaKnown RBP10.35□□□□□ -0.75
SMG1-208ENST00000563448 MLPHQ9BV36 600 aaPredicted RBP10.35□□□□□ -0.75
SMG1-208ENST00000563448 UBE2ZQ9H832 354 aaPredicted RBP10.35□□□□□ -0.75
SMG1-208ENST00000563448 NT5MQ9NPB1 228 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 HPS4Q9NQG7 708 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 ABCB8Q9NUT2 735 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 THG1LQ9NWX6 298 aaKnown RBP10.35□□□□□ -0.75
SMG1-208ENST00000563448 UBA2Q9UBT2 640 aaPredicted RBP10.35□□□□□ -0.75
SMG1-208ENST00000563448 VPS28Q9UK41 221 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 FBXO10Q9UK96 956 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 HPCAL4Q9UM19 191 aa10.35□□□□□ -0.75
SMG1-208ENST00000563448 GOLGA8MH3BSY2 632 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 SMAPO00193 183 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 MBTPS2O43462 519 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 NFATC1O95644 943 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ADH5P11766 374 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 PSMC3P17980 439 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 MAXP61244 160 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 SLC12A1Q13621 1099 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 CYTH1Q15438 398 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 GAB4Q2WGN9 574 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ZCCHC9Q8N567 271 aaKnown RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 PDCD7Q8N8D1 485 aaKnown RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 DCAF4L2Q8NA75 395 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 FCRL5Q96RD9 977 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 TXLNGYQ9BZA5 131 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ARFGAP3Q9NP61 516 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 DNAJC17Q9NVM6 304 aaKnown RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 EPS15L1Q9UBC2 864 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 VPS51Q9UID3 782 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 TTLL3Q9Y4R7 772 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 MUSKO15146 869 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 TRIM24O15164 1050 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 HOXC11O43248 304 aaPredicted RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 ECI2O75521 394 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 NEBLO76041 1014 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ADH1CP00326 375 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 APRTP07741 180 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 CISD3P0C7P0 127 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 KCNA5P22460 613 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 SP100P23497 879 aaPredicted RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 PDGFRLQ15198 375 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 FUT11Q495W5 492 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 PITRM1Q5JRX3 1037 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 FNBP1LQ5T0N5 605 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 KCTD11Q693B1 232 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 LINGO4Q6UY18 593 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ZNF534Q76KX8 674 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 TMC3Q7Z5M5 1100 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 KIAA0907Q7Z7F0 614 aaPredicted RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 C12orf40Q86WS4 652 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 KLHDC8BQ8IXV7 354 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.34□□□□□ -0.75
SMG1-208ENST00000563448 SPATA22Q8NHS9 363 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 PPM1EQ8WY54 764 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ATP2A3Q93084 1043 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 OXNAD1Q96HP4 312 aaPredicted RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 SLC2A11Q9BYW1 496 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 FOXP3Q9BZS1 431 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 ECT2Q9H8V3 914 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 EIF2B3Q9NR50 452 aaKnown RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 ZNF446Q9NWS9 450 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 GGA2Q9UJY4 613 aa10.34□□□□□ -0.75
SMG1-208ENST00000563448 TCF20Q9UGU0 1960 aaKnown RBP10.34□□□□□ -0.75
SMG1-208ENST00000563448 SPTBN5Q9NRC6 3674 aaKnown RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 TTC24A2A3L6 582 aaPredicted RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 E7EVH7 732 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 PPFIA2O75334 1257 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 GJB3O75712 270 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 PABPC1P11940 636 aaKnown RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 FOSL2P15408 326 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 HSPA9P38646 679 aaKnown RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 GRIA1P42261 906 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 TNNT3P45378 269 aaPredicted RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 LMAN1P49257 510 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 DSC2Q02487 901 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 DHX9Q08211 1270 aaKnown RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 ITKQ08881 620 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 NIPAL4Q0D2K0 466 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 SMAD4Q13485 552 aaKnown RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 OLIG2Q13516 323 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 SPARCL1Q14515 664 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 ZNF235Q14590 738 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 IHHQ14623 411 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 RFTN1Q14699 578 aaPredicted RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 CCDC25Q86WR0 208 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 YAF2Q8IY57 180 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.33□□□□□ -0.76
SMG1-208ENST00000563448 ZNF557Q8N988 423 aaPredicted RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 TSEN2Q8NCE0 465 aaKnown RBP10.33□□□□□ -0.76
SMG1-208ENST00000563448 MCUQ8NE86 351 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 ARRDC2Q8TBH0 407 aa10.33□□□□□ -0.76
SMG1-208ENST00000563448 ACDQ96AP0 544 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms