RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 LSM8O95777 96 aaKnown RBP16.09■□□□□ 0.17
CLK3-211ENST00000563297 PRNPP04156 253 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 PRLRP16471 622 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 CKMT2P17540 419 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 NOMO3P69849 1222 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 SLC20A2Q08357 652 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 ZNF284Q2VY69 593 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 TCP11X2Q5H9J9 407 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 C22orf39Q6P5X5 142 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 FBXL19Q6PCT2 694 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 ARCQ7LC44 396 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 HORMAD1Q86X24 394 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 FAM131BQ86XD5 332 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 SLC25A45Q8N413 288 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 EPS8L1Q8TE68 723 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 MYOCQ99972 504 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 SPON2Q9BUD6 331 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 IL36AQ9UHA7 158 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 DACH1Q9UI36 760 aa16.09■□□□□ 0.17
CLK3-211ENST00000563297 ZFR2Q9UPR6 939 aaKnown RBP16.09■□□□□ 0.17
CLK3-211ENST00000563297 F8VZ95 297 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 SDC3O75056 442 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 LEFTY1O75610 366 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 THEGLP0DJG4 465 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 HNF1BP35680 557 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 TARDBPQ13148 414 aaKnown RBP eCLIP16.08■□□□□ 0.163e-6■■■□□ 14.6
CLK3-211ENST00000563297 ILKQ13418 452 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 PROX2Q3B8N5 592 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 RAB6CQ53S08 254 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 CT47A1Q5JQC4 288 aaPredicted RBP16.08■□□□□ 0.16
CLK3-211ENST00000563297 NAA35Q5VZE5 725 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 ZNF783Q6ZMS7 281 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 ERN2Q76MJ5 926 aaKnown RBP16.08■□□□□ 0.16
CLK3-211ENST00000563297 HDAC8Q9BY41 377 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 ZYG11BQ9C0D3 744 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 RAB6CQ9H0N0 254 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 DYRK4Q9NR20 520 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 KLHL11Q9NVR0 708 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 WASF2Q9Y6W5 498 aa16.08■□□□□ 0.16
CLK3-211ENST00000563297 A0A087WV48 116 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 TRIM38O00635 465 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 SIGLEC6O43699 453 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 PCDH8O95206 1070 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 HNRNPA2B1P22626 353 aaKnown RBP16.07■□□□□ 0.16
CLK3-211ENST00000563297 EEF1GP26641 437 aaKnown RBP16.07■□□□□ 0.16
CLK3-211ENST00000563297 RECQLP46063 649 aaPredicted RBP16.07■□□□□ 0.16
CLK3-211ENST00000563297 ARF5P84085 180 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 ATP11AP98196 1134 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 GNA12Q03113 381 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 HES3Q5TGS1 186 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 RETSATQ6NUM9 610 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 EMC1Q8N766 993 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 MSANTD4Q8NCY6 345 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 OR13H1Q8NG92 308 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 GRIN3AQ8TCU5 1115 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 LRIG1Q96JA1 1093 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 NUP62CLQ9H1M0 184 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 GANQ9H2C0 597 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 ATP13A1Q9HD20 1204 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 FZD3Q9NPG1 666 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 PPARGC1AQ9UBK2 798 aaKnown RBP16.07■□□□□ 0.16
CLK3-211ENST00000563297 NOCTQ9UK39 431 aaKnown RBP16.07■□□□□ 0.16
CLK3-211ENST00000563297 CHD5Q8TDI0 1954 aa16.07■□□□□ 0.16
CLK3-211ENST00000563297 GFPT2O94808 682 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 CD160O95971 181 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 CYP1A1P04798 512 aaPredicted RBP16.06■□□□□ 0.16
CLK3-211ENST00000563297 CHRNB2P17787 502 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 DGKAP23743 735 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 ACP1P24666 158 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 AKT2P31751 481 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 ADRA1BP35368 520 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 SERPINH1P50454 418 aaKnown RBP16.06■□□□□ 0.16
CLK3-211ENST00000563297 CLDN2P57739 230 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 ZNF211Q13398 564 aaPredicted RBP16.06■□□□□ 0.16
CLK3-211ENST00000563297 TMEM259Q4ZIN3 620 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 SOWAHCQ53LP3 525 aaPredicted RBP16.06■□□□□ 0.16
CLK3-211ENST00000563297 CARD16Q5EG05 197 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 SEL1L3Q68CR1 1132 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 PHLDB2Q86SQ0 1253 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 ZNF677Q86XU0 584 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 DRC7Q8IY82 874 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 PCDH20Q8N6Y1 951 aaKnown RBP16.06■□□□□ 0.16
CLK3-211ENST00000563297 SLC20A1Q8WUM9 679 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 RXFP2Q8WXD0 754 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 HEPHQ9BQS7 1158 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 MAGEB5Q9BZ81 275 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 CEP44Q9C0F1 390 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 VPS16Q9H269 839 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 CAAP1Q9H8G2 361 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 METTL5Q9NRN9 209 aaKnown RBP16.06■□□□□ 0.16
CLK3-211ENST00000563297 NDFIP2Q9NV92 336 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 UCKL1Q9NWZ5 548 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 TAB2Q9NYJ8 693 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 OR12D3Q9UGF7 316 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 ACTL7AQ9Y615 435 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 IGSF10Q6WRI0 2623 aa16.06■□□□□ 0.16
CLK3-211ENST00000563297 LOC400499M0QZD8 3231 aa16.05■□□□□ 0.16
CLK3-211ENST00000563297 GIMD1P0DJR0 217 aa16.05■□□□□ 0.16
CLK3-211ENST00000563297 MMP8P22894 467 aa16.05■□□□□ 0.16
CLK3-211ENST00000563297 L1CAMP32004 1257 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms