RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PAPOLAP51003 745 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 LIMK2P53671 638 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 SESN2P58004 480 aaPredicted RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 RPL26P61254 145 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 THOC5Q13769 683 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 LBRQ14739 615 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 TBCCQ15814 346 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 ANKRD20A4Q4UJ75 823 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 MSS51Q4VC12 460 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 ARHGAP15Q53QZ3 475 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 RAB6CQ53S08 254 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 AARS2Q5JTZ9 985 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 RNF187Q5TA31 235 aaPredicted RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 PIK3R6Q5UE93 754 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 RNF43Q68DV7 783 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 FBXL22Q6P050 247 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 PKN3Q6P5Z2 889 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 SPATA21Q7Z572 469 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 PIGWQ7Z7B1 504 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 ZNF354CQ86Y25 554 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 MIB1Q86YT6 1006 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 NDUFAF2Q8N183 169 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 MPP5Q8N3R9 675 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 CPXM2Q8N436 756 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 ANKRD42Q8N9B4 389 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 DENND1AQ8TEH3 1009 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 PPM1EQ8WY54 764 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 ACDQ96AP0 544 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 OTUB2Q96DC9 234 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 IFT43Q96FT9 208 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 IMP4Q96G21 291 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 VPS39Q96JC1 886 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 PSKH2Q96QS6 385 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 TTC1Q99614 292 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 RAD9AQ99638 391 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 CLSTN3Q9BQT9 956 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 ZBED2Q9BTP6 218 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 HTATIP2Q9BUP3 242 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 C2orf49Q9BVC5 232 aaPredicted RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 TRIM55Q9BYV6 548 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 RAB6CQ9H0N0 254 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 RHOJQ9H4E5 214 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 RPL26L1Q9UNX3 145 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 TBC1D30Q9Y2I9 924 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 USH1CQ9Y6N9 552 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 VWA8A3KMH1 1905 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 TRAV19A0A0A6YYK7 116 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 GOLGA8QA0A0J9YX86 632 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 GOLGA8OA6NCC3 632 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 CFAP73A6NFT4 308 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 TRIM49D1C9J1S8 452 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 F8W8V4 182 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 GOLGA8NF8WBI6 632 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 ZNF197O14709 1029 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 SLC9A3R1O14745 358 aaPredicted RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 SLC7A4O43246 635 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 FGF18O76093 207 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 UPP2O95045 317 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 GLUD1P00367 558 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 RHOCP08134 193 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 ITGA2BP08514 1039 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 MYL4P12829 197 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 DRD4P21917 467 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 MGAT1P26572 445 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 GCAP28676 217 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 SERPINH1P50454 418 aaKnown RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 SLC12A2P55011 1212 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 SLC7A9P82251 487 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 GNA12Q03113 381 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 ZBTB17Q13105 803 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 FAXCQ5TGI0 409 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 MRNIPQ6NTE8 343 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 RETSATQ6NUM9 610 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 KLC3Q6P597 504 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 LVRNQ6Q4G3 990 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 RANBP10Q6VN20 620 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PACS1Q6VY07 963 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PRUNE1Q86TP1 453 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 KCNMB4Q86W47 210 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 FAM217AQ8IXS0 508 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 AFAP1L2Q8N4X5 818 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 DCAF4L2Q8NA75 395 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PPP1R14CQ8TAE6 165 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PPP4R1Q8TF05 950 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 MZB1Q8WU39 189 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PPP2R3CQ969Q6 453 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 ZNF669Q96BR6 464 aaPredicted RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 PAWRQ96IZ0 340 aaKnown RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 SEC16BQ96JE7 1060 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 C7orf26Q96N11 449 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 TCF12Q99081 682 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 RBBP8Q99708 897 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 MGME1Q9BQP7 344 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 CINPQ9BW66 212 aaPredicted RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 SLC39A8Q9C0K1 460 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 ZBP1Q9H171 429 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 KIF9Q9HAQ2 790 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PRDM10Q9NQV6 1147 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 ASAH2Q9NR71 780 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms