RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CFAP57Q96MR6 1250 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 C2orf49Q9BVC5 232 aaPredicted RBP11.91□□□□□ -0.5
USP3-220ENST00000561381 NAA15Q9BXJ9 866 aaKnown RBP11.91□□□□□ -0.5
USP3-220ENST00000561381 RAB6CQ9H0N0 254 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 CLSTN2Q9H4D0 955 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 FZD3Q9NPG1 666 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 SAMSN1Q9NSI8 373 aaKnown RBP11.91□□□□□ -0.5
USP3-220ENST00000561381 RRN3Q9NYV6 651 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 STAP1Q9ULZ2 295 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 DMTF1Q9Y222 760 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 ACTL7AQ9Y615 435 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 ASXL3Q9C0F0 2248 aa11.91□□□□□ -0.5
USP3-220ENST00000561381 IGLV3-10A0A075B6K4 115 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 A0A1W2PQU0 124 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 PRAMEF26H0Y7S4 382 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 PES1O00541 588 aaKnown RBP11.9□□□□□ -0.5
USP3-220ENST00000561381 TRIM38O00635 465 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 SRGAP2O75044 1071 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 ZNF821O75541 412 aaPredicted RBP11.9□□□□□ -0.5
USP3-220ENST00000561381 F9P00740 461 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 MMEP08473 750 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 JUPP14923 745 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 UCHL3P15374 230 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 OR1E1P30953 314 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 ZNF284Q2VY69 593 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 SETMARQ53H47 684 aaPredicted RBP11.9□□□□□ -0.5
USP3-220ENST00000561381 HES3Q5TGS1 186 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 NAA35Q5VZE5 725 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 SEL1L3Q68CR1 1132 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 SMYD5Q6GMV2 418 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 C22orf39Q6P5X5 142 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 LRRC31Q6UY01 552 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 SETD3Q86TU7 594 aaPredicted RBP11.9□□□□□ -0.5
USP3-220ENST00000561381 ERICH1Q86X53 443 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 FAM131BQ86XD5 332 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 FAM114A1Q8IWE2 563 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 OXR1Q8N573 874 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 GRIN3AQ8TCU5 1115 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 CPA5Q8WXQ8 436 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 KLHDC7BQ96G42 594 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 LRIG1Q96JA1 1093 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 C1orf74Q96LT6 269 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 SPON2Q9BUD6 331 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 PREBQ9HCU5 417 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 ZNF212Q9UDV6 495 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 TMEM59LQ9UK28 342 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 ZFR2Q9UPR6 939 aaKnown RBP11.9□□□□□ -0.5
USP3-220ENST00000561381 DOCK4Q8N1I0 1966 aa11.9□□□□□ -0.5
USP3-220ENST00000561381 TDRD6O60522 2096 aaKnown RBP11.9□□□□□ -0.51
USP3-220ENST00000561381 F8VZ95 297 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 SIGLEC6O43699 453 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 LEFTY1O75610 366 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 C1SP09871 688 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 ERCC5P28715 1186 aaPredicted RBP11.89□□□□□ -0.51
USP3-220ENST00000561381 NUDT1P36639 197 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 SCNN1AP37088 669 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 CLDN2P57739 230 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 NOMO3P69849 1222 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 ATP11AP98196 1134 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 OVGP1Q12889 678 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 TARDBPQ13148 414 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP3-220ENST00000561381 SOWAHCQ53LP3 525 aaPredicted RBP11.89□□□□□ -0.51
USP3-220ENST00000561381 C6orf118Q5T5N4 469 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 FBXL19Q6PCT2 694 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 DPY19L3Q6ZPD9 716 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 BNIPLQ7Z465 357 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 PHLDB2Q86SQ0 1253 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 HORMAD1Q86X24 394 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 SLC25A45Q8N413 288 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 EMC1Q8N766 993 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 TMIEQ8NEW7 156 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 SLC20A1Q8WUM9 679 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 MAGEB5Q9BZ81 275 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 UCKL1Q9NWZ5 548 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 TAB2Q9NYJ8 693 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 MYLKQ15746 1914 aa11.89□□□□□ -0.51
USP3-220ENST00000561381 LOC400499M0QZD8 3231 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 A0A087WV48 116 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 ILVBLA1L0T0 632 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 ZMPSTE24O75844 475 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 PCDH8O95206 1070 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 GJB6O95452 261 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 LSM8O95777 96 aaKnown RBP11.88□□□□□ -0.51
USP3-220ENST00000561381 PRNPP04156 253 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 THEGLP0DJG4 465 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 CKMT2P17540 419 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 HNF1BP35680 557 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 KLK7P49862 253 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 ARF5P84085 180 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 FGL2Q14314 439 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 PROX2Q3B8N5 592 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 TCP11X2Q5H9J9 407 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 GCNT7Q6ZNI0 430 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 ERN2Q76MJ5 926 aaKnown RBP11.88□□□□□ -0.51
USP3-220ENST00000561381 DRC7Q8IY82 874 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 OR13H1Q8NG92 308 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 EPS8L1Q8TE68 723 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 CCDC114Q96M63 670 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 BBC3Q96PG8 261 aaPredicted RBP11.88□□□□□ -0.51
USP3-220ENST00000561381 HAPLN3Q96S86 360 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms