RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CASP14P31944 242 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 SERPINH1P50454 418 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 C21orf59P57076 290 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 SLC14A1Q13336 389 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CCDC122Q5T0U0 273 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CFAP58Q5T655 872 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 C9orf64Q5T6V5 341 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 STPG1Q5TH74 334 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 DCAF12L1Q5VU92 463 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 OTUD1Q5VV17 481 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 KIAA0895LQ68EN5 471 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 NEK5Q6P3R8 708 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 FBXO38Q6PIJ6 1188 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 H2AFVQ71UI9 128 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 C14orf80Q86SX3 495 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CACUL1Q86Y37 369 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 PLPP6Q8IY26 295 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 RYBPQ8N488 228 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 PAF1Q8N7H5 531 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 RTL3Q8N8U3 475 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 TMIEQ8NEW7 156 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 FAM174AQ8TBP5 190 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 DNASE2BQ8WZ79 361 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CALR3Q96L12 384 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 RPL10LQ96L21 214 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 MRGPRX3Q96LB0 322 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 OSBPL1AQ9BXW6 950 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CD248Q9HCU0 757 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MPP6Q9NZW5 540 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 UVRAGQ9P2Y5 699 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 VPS51Q9UID3 782 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 AP4E1Q9UPM8 1137 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 DMTF1Q9Y222 760 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 EP300Q09472 2414 aaPredicted RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 OTOGLQ3ZCN5 2332 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 TMEM191CA6NGB0 347 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 ARHGAP33O14559 1287 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 BNIP3LO60238 219 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 RNGTTO60942 597 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 CNTN5O94779 1100 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 FSBPO95073 299 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 IGSF6O95976 241 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 SKILP12757 684 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 TFE3P19532 575 aaPredicted RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 ITPKAP23677 461 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 HNRNPH3P31942 346 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 PBX1P40424 430 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 PTGER3P43115 390 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 SSR1P43307 286 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 MAPK8P45983 427 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 HCAR3P49019 387 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 DNA2P51530 1060 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 CCR5P51681 352 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 SUOXP51687 545 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 NDST2P52849 883 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 RPL7AP62424 266 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 SF3A2Q15428 464 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 SETMARQ53H47 684 aaPredicted RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 ALFQ53S48 1182 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 ZFYVE27Q5T4F4 411 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 C22orf39Q6P5X5 142 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 SRLQ86TD4 932 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 VSTM4Q8IW00 320 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 STK40Q8N2I9 435 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 OXR1Q8N573 874 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 ZNF366Q8N895 744 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 OR14C36Q8NHC7 312 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 RAB7BQ96AH8 199 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 GDAP1L1Q96MZ0 367 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 SYT11Q9BT88 431 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 GTPBP2Q9BX10 602 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 ACE2Q9BYF1 805 aaPredicted RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 DHX35Q9H5Z1 703 aaKnown RBP8.84□□□□□ -0.99
USP3-208ENST00000558285 PREBQ9HCU5 417 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 PARD6AQ9NPB6 346 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 CTTNBP2NLQ9P2B4 639 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 IL36AQ9UHA7 158 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 SLCO3A1Q9UIG8 710 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 FZD10Q9ULW2 581 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 JRKLQ9Y4A0 524 aa8.84□□□□□ -0.99
USP3-208ENST00000558285 ATG2BQ96BY7 2078 aa8.83□□□□□ -1
USP3-208ENST00000558285 GVINP1Q7Z2Y8 2422 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3DA0A087WVF3 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3IA0A087WXS9 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3EA0A087X179 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3KA0A087X1G2 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 A0A1W2PP55 124 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3FA6NER0 549 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 FAM47DPA6NHR8 397 aa8.83□□□□□ -1
USP3-208ENST00000558285 WASH4PA8MWX3 477 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3LB9A6J9 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 AKR1B15C9JRZ8 316 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 KPNA3O00505 521 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 DDX3XO00571 662 aaKnown RBP eCLIP8.83□□□□□ -1
USP3-208ENST00000558285 MID1O15344 667 aa8.83□□□□□ -1
USP3-208ENST00000558285 BUB1O43683 1085 aa8.83□□□□□ -1
USP3-208ENST00000558285 KDELR3O43731 214 aa8.83□□□□□ -1
USP3-208ENST00000558285 GSRP00390 522 aa8.83□□□□□ -1
USP3-208ENST00000558285 GYPCP04921 128 aa8.83□□□□□ -1
USP3-208ENST00000558285 KRT7P08729 469 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms