RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 SPNS2Q8IVW8 549 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 HS6ST3Q8IZP7 471 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 PNPLA1Q8N8W4 532 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 CERS2Q96G23 380 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 FAM111AQ96PZ2 611 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 ZBED2Q9BTP6 218 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 TMEM106CQ9BVX2 250 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 GGT7Q9UJ14 662 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 SMG5Q9UPR3 1016 aaKnown RBP12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 HBS1LQ9Y450 684 aaKnown RBP12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 ANKRD36A6QL64 1941 aa12.96□□□□□ -0.34
VIPAS39-206ENST00000553888 SNRPAP09012 282 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 GSTA2P09210 222 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 GBP2P32456 591 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 CD86P42081 329 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 HARS2P49590 506 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ZNF33AQ06730 810 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 HSP90AA5PQ58FG0 334 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 HHATQ5VTY9 493 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 SNX30Q5VWJ9 437 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 TIGD7Q6NT04 549 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 PACS1Q6VY07 963 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ARL14EPQ8N8R7 260 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 CCDC97Q96F63 343 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 MYRFLQ96LU7 910 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ZBP1Q9H171 429 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 SLC2A6Q9UGQ3 507 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 LILRB3O75022 631 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 OAS1P00973 400 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 STXBP5Q5T5C0 1151 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 RNF135Q8IUD6 432 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 MAGEB18Q96M61 343 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 AGO1Q9UL18 857 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 FAM169AQ9Y6X4 670 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 PEX14O75381 377 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 KRT37O76014 449 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 MMP2P08253 660 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 MBL2P11226 248 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 NEK3P51956 506 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 IL9RQ01113 521 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 CDH17Q12864 832 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 MTA1Q13330 715 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 SERINC3Q13530 473 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 VEPH1Q14D04 833 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 SPRED3Q2MJR0 410 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 GKAP1Q5VSY0 366 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 MARC1Q5VT66 337 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 NAPEPLDQ6IQ20 393 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 TMEM135Q86UB9 458 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 PDZD8Q8NEN9 1154 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 PTPRN2Q92932 1015 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 TTC17Q96AE7 1141 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 APOPT1Q96IL0 206 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ZFRQ96KR1 1074 aaKnown RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 KLF16Q9BXK1 252 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 FSD1LQ9BXM9 530 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ZFATQ9P243 1243 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 ZNF180Q9UJW8 692 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 PCDHB12Q9Y5F1 795 aa12.95□□□□□ -0.34
VIPAS39-206ENST00000553888 PRRC2BQ5JSZ5 2229 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ERI2A8K979 691 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 H3BNC9 293 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 HGSO14964 777 aaPredicted RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ADRA1AP35348 466 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ERVFC1P60507 584 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 C1QTNF8P60827 252 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 SLC18A2Q05940 514 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 MARK2Q7KZI7 788 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 FIBCD1Q8N539 461 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ACVR1CQ8NER5 493 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 SRPK1Q96SB4 655 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 SPON2Q9BUD6 331 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 MECRQ9BV79 373 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 IL21Q9HBE4 155 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 AAR2Q9Y312 384 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 HIDE1A8MVS5 230 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 FGBP02675 491 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ALDOAP04075 364 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 SLC11A2P49281 568 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 EPHB3P54753 998 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 WNT3AP56704 352 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 IRX4P78413 519 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 MGAT5Q09328 741 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 PPM1JQ5JR12 505 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 SPANXN3Q5MJ09 141 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 TMC7Q7Z402 723 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 PIGWQ7Z7B1 504 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 TCEAL8Q8IYN2 117 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 CACNA2D3Q8IZS8 1091 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ZNF276Q8N554 614 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 ADAMTS19Q8TE59 1207 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 EXOC2Q96KP1 924 aa12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 IARS2Q9NSE4 1012 aaKnown RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 C20orf96Q9NUD7 363 aaPredicted RBP12.94□□□□□ -0.34
VIPAS39-206ENST00000553888 TPP1O14773 563 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 ANXA9O76027 345 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 CXCL14O95715 111 aa12.93□□□□□ -0.34
VIPAS39-206ENST00000553888 F11P03951 625 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms