RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FGF13Q92913 245 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ZFRQ96KR1 1074 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 THTPAQ9BU02 230 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 PPCSQ9HAB8 311 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 S100A14Q9HCY8 104 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 PFDN4Q9NQP4 134 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ARHGEF4Q9NR80 690 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 INIPQ9NRY2 104 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 HMGXB4Q9UGU5 601 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SLC7A8Q9UHI5 535 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 A0A1W2PPM1 405 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 SPECC1L-ADORA2AF8WAN1 911 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 MOSPD3O75425 235 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 LAMP2P13473 410 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 CYP11B1P15538 503 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 PTPN2P17706 415 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 KRT4P19013 534 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 CD58P19256 250 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 ACO1P21399 889 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 PCSK1P29120 753 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 HOXD12P35452 270 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 ASPAP45381 313 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 TSPY1Q01534 308 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 DLG1Q12959 904 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 MSLNQ13421 630 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 LLGL1Q15334 1064 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 DDR2Q16832 855 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 NADK2Q4G0N4 442 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 OTOP3Q7RTS5 596 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 TTC7BQ86TV6 843 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 NOP9Q86U38 636 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 CROCCP3Q8IVE0 287 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 DCP1BQ8IZD4 617 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 ZCCHC9Q8N567 271 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 RBM15BQ8NDT2 890 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 HSPBAP1Q96EW2 488 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 CLPTM1LQ96KA5 538 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF512Q96ME7 567 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 RPP25Q9BUL9 199 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 MAK16Q9BXY0 300 aaKnown RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 LRRC3Q9BY71 257 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 VPS11Q9H270 941 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 KCNK13Q9HB14 408 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 SAYSD1Q9NPB0 183 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM30AQ9NV96 361 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 ARMCX1Q9P291 453 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 PSMC3IPQ9P2W1 217 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 FAF1Q9UNN5 650 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-216ENST00000552909 PLA2G4CQ9UP65 541 aa7.82□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM247A6NEH6 219 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 E9PBE3 544 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PI4K2BG5E9Z4 385 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CLDN5O00501 218 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TM9SF1O15321 606 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TFAP2AP05549 437 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ENO1P06733 434 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 POU2F2P09086 479 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 DLDP09622 509 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 HAPLN1P10915 354 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MYL2P10916 166 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CEBPBP17676 345 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ALDH1A3P47895 512 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ARL4CP56559 192 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 IRX4P78413 519 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PDE1BQ01064 536 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF394Q53GI3 561 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MDH1BQ5I0G3 518 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PRSS36Q5K4E3 855 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 LPCAT4Q643R3 524 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 KYAT3Q6YP21 454 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ANKS1BQ7Z6G8 1248 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 DNAJB7Q7Z6W7 309 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PATL1Q86TB9 770 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TMC8Q8IU68 726 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NPAS3Q8IXF0 933 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 BBS5Q8N3I7 341 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SLC25A41Q8N5S1 370 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ICA1LQ8NDH6 482 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF564Q8TBZ8 553 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SPPL2BQ8TCT7 592 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 FGF14Q92915 247 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ACSF2Q96CM8 615 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MRRFQ96E11 262 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MCRS1Q96EZ8 462 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PCED1BQ96HM7 432 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZSWIM3Q96MP5 696 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 BTBD9Q96Q07 612 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MRPS26Q9BYN8 205 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 DCLK3Q9C098 648 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NIF3L1Q9GZT8 377 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 RBM38Q9H0Z9 239 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SNX25Q9H3E2 840 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 VPS37BQ9H9H4 285 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 KCNK12Q9HB15 430 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF334Q9HCZ1 680 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 C11orf16Q9NQ32 467 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CISHQ9NSE2 258 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PLK2Q9NYY3 685 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CHORDC1Q9UHD1 332 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SLC24A2Q9UI40 661 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms