RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 STRNO43815 780 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 CYP11A1P05108 521 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RALBP11234 206 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 LCP1P13796 627 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 IL10P22301 178 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ADORA2BP29275 332 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 AFF1P51825 1210 aaKnown RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FOLH1Q04609 750 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RING1Q06587 406 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SIX1Q15475 284 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PARP6Q2NL67 630 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TNFAIP8L3Q5GJ75 292 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 B3GNT6Q6ZMB0 384 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 C1orf229Q6ZS94 237 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 AMIGO2Q86SJ2 522 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 CRIPAKQ8N1N5 446 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RASGEF1CQ8N431 466 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TMCO5AQ8N6Q1 288 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 KLHL23Q8NBE8 558 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 GMCL1P1Q8NEA9 526 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 BAHD1Q8TBE0 780 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ACER1Q8TDN7 264 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 GIPC3Q8TF64 312 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 DCAF4Q8WV16 495 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SKA2Q8WVK7 121 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 CRYGNQ8WXF5 182 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 WRNIP1Q96S55 665 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FAM192AQ9GZU8 254 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 CCDC68Q9H2F9 335 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RNPEPQ9H4A4 650 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RIOX1Q9H6W3 641 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 NRBP2Q9NSY0 501 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ATXN10Q9UBB4 475 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 SLC24A2Q9UI40 661 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PHF24Q9UPV7 400 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TMX2Q9Y320 296 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ZHX2Q9Y6X8 837 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 H0YCG3 227 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 APOL1O14791 398 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 EIF3DO15371 548 aaKnown RBP eCLIP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 USP12O75317 370 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PEX2P28328 305 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 CHN2P52757 468 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 LBX1P52954 281 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 BACE1P56817 501 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 NSUN2Q08J23 767 aaKnown RBP eCLIP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TRAF2Q12933 501 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PIGHQ14442 188 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 PCSK7Q16549 785 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 DUOXA2Q1HG44 320 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 CNPY1Q3B7I2 92 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RALGPS1Q5JS13 557 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 TMEM201Q5SNT2 666 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 C6orf10Q5SRN2 563 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 VWA5B1Q5TIE3 1220 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 NPNTQ6UXI9 565 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 DHDDSQ86SQ9 333 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ZCCHC9Q8N567 271 aaKnown RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 NR1H4Q96RI1 486 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 FOXP3Q9BZS1 431 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RPF1Q9H9Y2 349 aaKnown RBP5.58□□□□□ -1.52
LIMA1-203ENST00000547825 LRRC4Q9HBW1 653 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 RRN3Q9NYV6 651 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF180Q9UJW8 692 aa5.58□□□□□ -1.52
LIMA1-203ENST00000547825 A8MXQ7 604 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 OR6B1O95007 311 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 KRT75O95678 551 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SCGB1D2O95969 90 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 OCM2P0CE71 109 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 OCMP0CE72 109 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 VCLP18206 1134 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 MAGP20916 626 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 GLRA2P23416 452 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ALDH1A3P47895 512 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 UBE3AQ05086 875 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PTK6Q13882 451 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CLEC16AQ2KHT3 1053 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PKN3Q6P5Z2 889 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TRIM72Q6ZMU5 477 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CATSPERGQ6ZRH7 1159 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ARMCX6Q7L4S7 300 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ENOSF1Q7L5Y1 443 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SYNPOQ8N3V7 929 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 RNF149Q8NC42 400 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 EXD1Q8NHP7 514 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 MMP19Q99542 508 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 LIN28AQ9H9Z2 209 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SARS2Q9NP81 518 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 NDUFA13Q9P0J0 144 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TBX20Q9UMR3 447 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 DNAH14Q0VDD8 3507 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 GTPBP10A4D1E9 387 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 M0R3G1 203 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TM9SF1O15321 606 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 GFRA3O60609 400 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 DAB1O75553 588 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ZFXP17010 805 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 NR4A1P22736 598 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TBXAS1P24557 533 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 RGS2P41220 211 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms