RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CEP68Q76N32 757 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TTC7BQ86TV6 843 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 MMAAQ8IVH4 418 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 TRIML2Q8N7C3 387 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 MFSD2AQ8NA29 543 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TTC9Q92623 222 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TRIM43Q96BQ3 446 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 GLT1D1Q96MS3 346 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 UIMC1Q96RL1 719 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 PRPF18Q99633 342 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 FERMT1Q9BQL6 677 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 RNPEPQ9H4A4 650 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 KIF26AQ9ULI4 1882 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 CAPN8A6NHC0 703 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 POTEMA6NI47 508 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 POC1B-GALNT4F8VUJ3 575 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TXNDC9O14530 226 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 MED24O75448 989 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 MTRF1O75570 445 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 EFEMP2O95967 443 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 M6PRP20645 277 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 ITGAXP20702 1163 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 FUT4P22083 530 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 JAK1P23458 1154 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 GRK2P25098 689 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TKTP29401 623 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 CRHR1P34998 444 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 RARRES1P49788 294 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 GABREP78334 506 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 FMO1Q01740 532 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 PRKCEQ02156 737 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 CDC20Q12834 499 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TRIP13Q15645 432 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 OASLQ15646 514 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 GRIK4Q16099 956 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 GNASQ5JWF2 1037 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 SCARA3Q6AZY7 606 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 ALYREFQ86V81 257 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 PALB2Q86YC2 1186 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 NAT8LQ8N9F0 302 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 SP7Q8TDD2 431 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 KBTBD7Q8WVZ9 684 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 PYDC1Q8WXC3 89 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 HERVK_113Q902F9 699 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 RMND5BQ96G75 393 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 PRR11Q96HE9 360 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 GCNAQ96QF7 691 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 FIZ1Q96SL8 496 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 WDR12Q9GZL7 423 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 RMND5AQ9H871 391 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 VPS37BQ9H9H4 285 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 GPN2Q9H9Y4 310 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 PRM3Q9NNZ6 103 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 CD320Q9NPF0 282 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 COQ4Q9Y3A0 265 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TMEM265A0A087WTH1 108 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 PRR5-ARHGAP8B1AHC4 643 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 BCAS2O75934 225 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 C6orf222P0C671 652 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 SERPINB9P50453 376 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 ARHGAP8P85298 464 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 BEX3Q00994 111 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 MBTPS1Q14703 1052 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 SUZ12Q15022 739 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 TRIM60Q495X7 471 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 C1orf186Q6ZWK4 172 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TMEM102Q8N9M5 508 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 S100ZQ8WXG8 99 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 WNT8BQ93098 351 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 LRRC39Q96DD0 335 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 POP1Q99575 1024 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 LXNQ9BS40 222 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 PARVGQ9HBI0 331 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 XPNPEP1Q9NQW7 623 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 STARD7Q9NQZ5 370 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 CYP26B1Q9NR63 512 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 ARMC1Q9NVT9 282 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 THG1LQ9NWX6 298 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 ANKMY1Q9P2S6 941 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 SLC17A7Q9P2U7 560 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TDRKHQ9Y2W6 561 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 TTC3P53804 2025 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 MN1Q10571 1320 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 GOLGA8QA0A0J9YX86 632 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 NPHP3-ACAD11A0A0J9YXS1 232 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 FAM237BA0A1B0GVD1 139 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 C17orf102A2RUQ5 167 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 GOLGA8OA6NCC3 632 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 ZNF839A8K0R7 811 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 CFAP99D6REC4 459 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 GOLGA8NF8WBI6 632 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 GOLGA8MH3BSY2 632 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 K7EPI3 171 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 EIF3FO00303 357 aaPredicted RBP5.34□□□□□ -1.55
USP28-213ENST00000544967 DGKIO75912 1065 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 KRT37O76014 449 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 BPGMP07738 259 aa5.34□□□□□ -1.55
USP28-213ENST00000544967 ZNF286BP0CG31 522 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms