RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC39A10Q9ULF5 831 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CACNA1FO60840 1977 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 GSAPA4D1B5 854 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 F8W810 466 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SGTAO43765 313 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 LDOC1O95751 146 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DLGAP3O95886 979 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 GLI1P08151 1106 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ACRP10323 421 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 JUPP14923 745 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SMPD1P17405 629 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 PTPN2P17706 415 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 TARSP26639 723 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SLC6A3Q01959 620 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 TROAPQ12815 778 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CCDC103Q8IW40 242 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 BRSK2Q8IWQ3 736 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 PHACTR4Q8IZ21 702 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 RNF217Q8TC41 542 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 MKL1Q969V6 931 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 IL12RB2Q99665 862 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 RTFDC1Q9BY42 306 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DDX43Q9NXZ2 648 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DLGAP2Q9P1A6 1054 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ARHGAP28Q9P2N2 729 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 H3BUI4 141 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 LDLRP01130 860 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CSH1P0DML2 217 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CSH2P0DML3 217 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF7P17097 686 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 NFKB1P19838 968 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ME2P23368 584 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 GABRB2P47870 512 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 RPL14P50914 215 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 OTUD4Q01804 1114 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 KCNMA1Q12791 1236 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 KCNA10Q16322 511 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 HABP4Q5JVS0 413 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CASP12Q6UXS9 341 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 MOSPD2Q8NHP6 518 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 EPS8L3Q8TE67 593 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PTCD3Q96EY7 689 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 FAM111AQ96PZ2 611 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PNPLA3Q9NST1 481 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 LNPEPQ9UIQ6 1025 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PSMD12O00232 456 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TRIM13O60858 407 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 STX11O75558 287 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 NPR3P17342 541 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 FSHRP23945 695 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PPP3CCP48454 512 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SNAP25P60880 206 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 KLHL12Q53G59 568 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 INO80DQ53TQ3 878 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SWT1Q5T5J6 900 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TTC23Q5W5X9 447 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ERICH5Q6P6B1 374 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 BHLHB9Q6PI77 547 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 STRA8Q7Z7C7 330 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 NT5DC3Q86UY8 548 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CHPFQ8IZ52 775 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 KRT78Q8N1N4 520 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 FAR1Q8WVX9 515 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ACOT12Q8WYK0 555 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 NELL1Q92832 810 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PABPC5Q96DU9 382 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF184Q99676 751 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 HOPXQ9BPY8 73 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 KCNS3Q9BQ31 491 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TRMOQ9BU70 441 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TRMT61BQ9BVS5 477 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 A1CFQ9NQ94 594 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 DNAAF2Q9NVR5 837 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 MOCS2O96007 188 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CACNA2D1P54289 1103 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 NR1H2P55055 460 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ATP6V0D1P61421 351 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ALG11Q2TAA5 492 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF549Q6P9A3 640 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 R3HCC1LQ7Z5L2 792 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CHSY1Q86X52 802 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF786Q8N393 782 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 OTULINQ96BN8 352 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PPP3R2Q96LZ3 170 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CLEC4MQ9H2X3 399 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TAS2R13Q9NYV9 303 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SNX7Q9UNH6 387 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CNTNAP1P78357 1384 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 LRRC37A3O60309 1634 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TPSB2P20231 275 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TM4SF1P30408 202 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SOAT1P35610 550 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 BLKP51451 505 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 AQP5P55064 265 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 HADHBP55084 474 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 BEX3Q00994 111 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TRAF3Q13114 568 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TPSAB1Q15661 275 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM44Q2T9K0 475 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TBCELQ5QJ74 424 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms