RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ZNF438Q7Z4V0 828 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 KIAA0907Q7Z7F0 614 aaPredicted RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 TICAM1Q8IUC6 712 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 WDR49Q8IV35 697 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CFAP52Q8N1V2 620 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SDR16C5Q8N3Y7 309 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 FAM184AQ8NB25 1140 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF548Q8NEK5 533 aaPredicted RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 RNF139Q8WU17 664 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 NDRG1Q92597 394 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 LARP4BQ92615 738 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PTPRN2Q92932 1015 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 KCNN1Q92952 543 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SYAP1Q96A49 352 aaPredicted RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PLD4Q96BZ4 506 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 HVCN1Q96D96 273 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CYFIP2Q96F07 1278 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 MRGPRX3Q96LB0 322 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CDK5RAP1Q96SZ6 601 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CPEB1Q9BZB8 566 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 TGIF2Q9GZN2 237 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SDCBP2Q9H190 292 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 ST6GALNAC4Q9H4F1 302 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CSNK1G1Q9HCP0 422 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 CLIC5Q9NZA1 410 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 NCKIPSDQ9NZQ3 722 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 HMGXB4Q9UGU5 601 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SALL4Q9UJQ4 1053 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SARDHQ9UL12 918 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 TPX2Q9ULW0 747 aaKnown RBP4.92□□□□□ -1.62
LIMS1-214ENST00000542845 TP53TG5Q9Y2B4 290 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 PCDHA5Q9Y5H7 936 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 SCN8AQ9UQD0 1980 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 MED13Q9UHV7 2174 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 C2CD3Q4AC94 2353 aa4.92□□□□□ -1.62
LIMS1-214ENST00000542845 A0A1B0GTL3 188 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ARHGAP10A1A4S6 786 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 A6NNZ2 444 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 C9orf172C9J069 976 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TMX2-CTNND1H3BSU7 103 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CLIC2O15247 247 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 MSI1O43347 362 aaKnown RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CNTN5O94779 1100 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 MOCS3O95396 460 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CSF2P04141 144 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ANXA6P08133 673 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 LIFP15018 202 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TRIM21P19474 475 aaKnown RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 HNRNPA2B1P22626 353 aaKnown RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ATICP31939 592 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 NUDT1P36639 197 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CD97P48960 835 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 KIF11P52732 1056 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ECT2LQ008S8 904 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 EIF3IQ13347 325 aaKnown RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 PDE1CQ14123 709 aaPredicted RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 SEPT6Q14141 434 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 FGL2Q14314 439 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 PRRT3Q5FWE3 981 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 FSCBQ5H9T9 825 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 PITRM1Q5JRX3 1037 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ADGRF1Q5T601 910 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 FAXCQ5TGI0 409 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 FAM46CQ5VWP2 391 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CCDC186Q7Z3E2 898 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TMPRSS9Q7Z410 1059 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TRIM69Q86WT6 500 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 DTX1Q86Y01 620 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 SLC35F3Q8IY50 421 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 APCDD1Q8J025 514 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 RBFAQ8N0V3 343 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 SLC22A18ASQ8N1D0 253 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF276Q8N554 614 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 FBXO18Q8NFZ0 1043 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 WDR48Q8TAF3 677 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CPT1CQ8TCG5 803 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 NAT6Q93015 286 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 NKD1Q969G9 470 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TTC17Q96AE7 1141 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 CCDC74AQ96AQ1 378 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 HSH2DQ96JZ2 352 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TMEM74Q96NL1 305 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 FGFBP2Q9BYJ0 223 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TCEAL2Q9H3H9 227 aaPredicted RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ACBD3Q9H3P7 528 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 DONSONQ9NYP3 566 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 KLF15Q9UIH9 416 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 TUBD1Q9UJT1 453 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 INTS6Q9UL03 887 aaKnown RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.91□□□□□ -1.62
LIMS1-214ENST00000542845 PCDHGB7Q9Y5F8 929 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 LRRK2Q5S007 2527 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 ITIH6Q6UXX5 1313 aa4.91□□□□□ -1.62
LIMS1-214ENST00000542845 SDK2Q58EX2 2172 aa4.9□□□□□ -1.62
LIMS1-214ENST00000542845 A0A1W2PQ27 194 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 A0A1W2PQ64 194 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 A0A1W2PQC6 194 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 TYW5A2RUC4 315 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 POM121BA6NF01 834 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms