RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CTHP32929 405 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ETFBP38117 255 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 STK19P49842 368 aaPredicted RBP9.52□□□□□ -0.89
DDX55-208ENST00000541259 IL10RBQ08334 325 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 SLC10A7Q0GE19 358 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 WASHC5Q12768 1159 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ZBTB17Q13105 803 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 PON2Q15165 354 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 CYTH1Q15438 398 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 TRIP13Q15645 432 aaPredicted RBP9.52□□□□□ -0.89
DDX55-208ENST00000541259 TMEM259Q4ZIN3 620 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 SLC44A4Q53GD3 710 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 EMC10Q5UCC4 262 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 LRRC49Q8IUZ0 686 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 CDKL3Q8IVW4 592 aaPredicted RBP9.52□□□□□ -0.89
DDX55-208ENST00000541259 CCDC105Q8IYK2 499 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ALLCQ8N6M5 410 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 CEP112Q8N8E3 955 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 DCAF4L2Q8NA75 395 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 MNS1Q8NEH6 495 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ATL2Q8NHH9 583 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 HTR3CQ8WXA8 447 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 EZH1Q92800 747 aaPredicted RBP9.52□□□□□ -0.89
DDX55-208ENST00000541259 DNASE1L2Q92874 299 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 TTC17Q96AE7 1141 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ZNF419Q96HQ0 510 aaPredicted RBP9.52□□□□□ -0.89
DDX55-208ENST00000541259 CCDC114Q96M63 670 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 P2RY13Q9BPV8 354 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 HINFPQ9BQA5 517 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 BRD8Q9H0E9 1235 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 ZDHHC4Q9NPG8 344 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 PCYOX1Q9UHG3 505 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 AMACRQ9UHK6 382 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 SLCO3A1Q9UIG8 710 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 HCN2Q9UL51 889 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 HPCAL4Q9UM19 191 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 DUSP12Q9UNI6 340 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 SORCS3Q9UPU3 1222 aa9.52□□□□□ -0.89
DDX55-208ENST00000541259 CKAP5Q14008 2032 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 TTC24A2A3L6 582 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 TBC1D3BA6NDS4 549 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 K7EQS6 105 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 SGK1O00141 431 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 RNF103O00237 685 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 MUSKO15146 869 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 TTI1O43156 1089 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 RAD51CO43502 376 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 SMAD6O43541 496 aaKnown RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 IFNB1P01574 187 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 CCNB1P14635 433 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 POLR2EP19388 210 aaKnown RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 PTPN3P26045 913 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 EIF2DP41214 584 aaKnown RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 GRIA2P42262 883 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 FNTAP49354 379 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 IFI35P80217 286 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 DMC1Q14565 340 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 HEATR6Q6AI08 1181 aaKnown RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 FSTL4Q6MZW2 842 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 GSTA5Q7RTV2 222 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 RETREG3Q86VR2 466 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 RALGPS2Q86X27 583 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 AHI1Q8N157 1196 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 ZNF567Q8N184 647 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 PGBD5Q8N414 524 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 MMGT1Q8N4V1 131 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 TAB3Q8N5C8 712 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 CNTD1Q8N815 330 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 ZNF557Q8N988 423 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 TERB1Q8NA31 727 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 WFIKKN2Q8TEU8 576 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 MAML1Q92585 1016 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 MRGPRX3Q96LB0 322 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 IL12RB2Q99665 862 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 LRRC1Q9BTT6 524 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 C2orf49Q9BVC5 232 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 CIPCQ9C0C6 399 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 C8orf33Q9H7E9 229 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 ELOVL2Q9NXB9 296 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 UBA2Q9UBT2 640 aaPredicted RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 CA14Q9ULX7 337 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 ERVW-1Q9UQF0 538 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 FCF1Q9Y324 198 aaKnown RBP9.51□□□□□ -0.89
DDX55-208ENST00000541259 NEU2Q9Y3R4 380 aa9.51□□□□□ -0.89
DDX55-208ENST00000541259 A0A0A0MRY4 1105 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 CFAP69A5D8W1 941 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 C5orf60A6NFR6 353 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.5□□□□□ -0.89
DDX55-208ENST00000541259 WASH3PC4AMC7 463 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 F5H423 210 aaPredicted RBP9.5□□□□□ -0.89
DDX55-208ENST00000541259 ZBTB24O43167 697 aaPredicted RBP9.5□□□□□ -0.89
DDX55-208ENST00000541259 ZNF821O75541 412 aaPredicted RBP9.5□□□□□ -0.89
DDX55-208ENST00000541259 GJB3O75712 270 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 SLU7O95391 586 aaKnown RBP9.5□□□□□ -0.89
DDX55-208ENST00000541259 EGFP01133 1207 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 KRT14P02533 472 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 APODP05090 189 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 HLA-DQB2P05538 268 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 SRCP12931 536 aa9.5□□□□□ -0.89
DDX55-208ENST00000541259 STIP1P31948 543 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms