RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 CTSLP07711 333 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 GLDCP23378 1020 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 EPHB2P29323 1055 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 CTSKP43235 329 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 METAP1P53582 386 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 UBASH3AP57075 661 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 C21orf59P57076 290 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 CNTN1Q12860 1018 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 KIF19Q2TAC6 998 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 HLA-BQ31612 363 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 ZSCAN23Q3MJ62 389 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 PIP5KL1Q5T9C9 394 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 NEK5Q6P3R8 708 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 SCYL2Q6P3W7 929 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.8□□□□□ -0.52
RTN3-209ENST00000538995 NAXDQ8IW45 347 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 ARHGEF2Q92974 986 aaKnown RBP11.8□□□□□ -0.52
RTN3-209ENST00000538995 SLC6A18Q96N87 628 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 NCAPGQ9BPX3 1015 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 HDAC8Q9BY41 377 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 CATSPERBQ9H7T0 1116 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 DYRK4Q9NR20 520 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 TM7SF3Q9NS93 570 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 IL36AQ9UHA7 158 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 FZD10Q9ULW2 581 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 HPCAL4Q9UM19 191 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 DMTF1Q9Y222 760 aa11.8□□□□□ -0.52
RTN3-209ENST00000538995 FNDC3AQ9Y2H6 1198 aaKnown RBP11.8□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3DA0A087WVF3 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3IA0A087WXS9 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3EA0A087X179 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3KA0A087X1G2 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3FA6NER0 549 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 TMEM191CA6NGB0 347 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TMCO5BA8MYB1 307 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3LB9A6J9 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 KPNA3O00505 521 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 FLRT2O43155 660 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 BNIP3LO60238 219 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 RTN2O75298 545 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 ZNF821O75541 412 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 FTLP02792 175 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 TPM3P06753 285 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3HP0C7X1 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 PSMA2P25787 234 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 ACVRL1P37023 503 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 CCT8P50990 548 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 YBEYP58557 167 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 PPP2CBP62714 309 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 PPP2CAP67775 309 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 SIM1P81133 766 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 OGDHQ02218 1023 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 OVGP1Q12889 678 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 SUZ12Q15022 739 aaKnown RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 POLD3Q15054 466 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 ZNF423Q2M1K9 1284 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 PARP15Q460N3 678 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 SLC45A4Q5BKX6 768 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 CARD16Q5EG05 197 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3GQ6DHY5 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3CQ6IPX1 549 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 NAPEPLDQ6IQ20 393 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 DBX2Q6ZNG2 339 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 DPY19L3Q6ZPD9 716 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 PRPF39Q86UA1 669 aaKnown RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 VPS36Q86VN1 386 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 IQCHQ86VS3 1027 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 PSTKQ8IV42 348 aaKnown RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 TBC1D3Q8IZP1 549 aaPredicted RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 CASKIN2Q8WXE0 1202 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 LRIG1Q96JA1 1093 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 HEPHQ9BQS7 1158 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 ISCUQ9H1K1 167 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 EBF2Q9HAK2 575 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 IL21RQ9HBE5 538 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 MRPL47Q9HD33 250 aaKnown RBP11.79□□□□□ -0.52
RTN3-209ENST00000538995 NDFIP2Q9NV92 336 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 DNAI1Q9UI46 699 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 SNX11Q9Y5W9 270 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 DOCK4Q8N1I0 1966 aa11.79□□□□□ -0.52
RTN3-209ENST00000538995 A0A1W2PR77 199 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 YKT6O15498 198 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 KDELR3O43731 214 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 SH3BP5O60239 455 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 PCDHGA12O60330 932 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 RNGTTO60942 597 aaKnown RBP11.78□□□□□ -0.52
RTN3-209ENST00000538995 CBFA2T3O75081 653 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 LEFTY1O75610 366 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 RNF8O76064 485 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 TRIM16O95361 564 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 CD160O95971 181 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 GSRP00390 522 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 ITGB7P26010 798 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 CD38P28907 300 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 CCNHP51946 323 aaPredicted RBP11.78□□□□□ -0.52
RTN3-209ENST00000538995 ZNF135P52742 658 aaPredicted RBP11.78□□□□□ -0.52
RTN3-209ENST00000538995 TAS2R38P59533 333 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 ZBED6P86452 979 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 INAVAQ3KP66 663 aa11.78□□□□□ -0.52
RTN3-209ENST00000538995 POM121L1PQ3SYA9 428 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms