RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 OLFML3Q9NRN5 406 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 FOXD4L1Q9NU39 408 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 SARDHQ9UL12 918 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 NAALADL1Q9UQQ1 740 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 NBASA2RRP1 2371 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 GCATO75600 419 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 ZBED1O96006 694 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 PNLIPP16233 465 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 OAS2P29728 719 aaKnown RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 STK19P49842 368 aaPredicted RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 TAS2R38P59533 333 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 HMGN5P82970 282 aaKnown RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 PPARDQ03181 441 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 CYP24A1Q07973 514 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 EIF2B5Q13144 721 aaKnown RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 NCOA4Q13772 614 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 SGSM1Q2NKQ1 1148 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 EFHC2Q5JST6 749 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 PPP1R26Q5T8A7 1209 aaPredicted RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 PIP5KL1Q5T9C9 394 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 PIM3Q86V86 326 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 NLGN4XQ8N0W4 816 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 NLGN4YQ8NFZ3 816 aaPredicted RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 STARD8Q92502 1023 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 AZIN2Q96A70 460 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 LRRC61Q9BV99 259 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 UBXN6Q9BZV1 441 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 UNKQ9C0B0 810 aaKnown RBP9.4□□□□□ -0.9
USP28-205ENST00000537706 SDCBP2Q9H190 292 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 SFMBT1Q9UHJ3 866 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 KLF15Q9UIH9 416 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 RABGEF1Q9UJ41 708 aa9.4□□□□□ -0.9
USP28-205ENST00000537706 POM121BA6NF01 834 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 CASC3O15234 703 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 BNIP3LO60238 219 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 VAV1P15498 845 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 TSHRP16473 764 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 RAB15P59190 212 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 MRPL49Q13405 166 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 NFKBIBQ15653 356 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 CLPPQ16740 277 aaPredicted RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 DCAF12Q5T6F0 453 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 SEL1L3Q68CR1 1132 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 ERN2Q76MJ5 926 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 DENND6BQ8NEG7 585 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 TAF4BQ92750 862 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 TEFMQ96QE5 360 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 CYP4F12Q9HCS2 524 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 APPL1Q9UKG1 709 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 ZFR2Q9UPR6 939 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 POLHQ9Y253 713 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 KCNMB2Q9Y691 235 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 KIF26BQ2KJY2 2108 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 GOLGA6L7A0A1B0GV03 622 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 TCP11X1B4DZS4 312 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 TOR1BO14657 336 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 PAK4O96013 591 aaPredicted RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 PRNPP04156 253 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 RPN1P04843 607 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 PRF1P14222 555 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 VASPP50552 380 aaPredicted RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 INPP5JQ15735 1006 aaPredicted RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 TMEM259Q4ZIN3 620 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 ZRANB3Q5FWF4 1079 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 SV2BQ7L1I2 683 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 RD3Q7Z3Z2 195 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 GDF7Q7Z4P5 450 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 SLITRK4Q8IW52 837 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 NRSN1Q8IZ57 195 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 PCDH19Q8TAB3 1148 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 FRS2Q8WU20 508 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 NANOS1Q8WY41 292 aaKnown RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 TCTN2Q96GX1 697 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 LENG8Q96PV6 779 aaPredicted RBP9.39□□□□□ -0.91
USP28-205ENST00000537706 ABCC13Q9NSE7 274 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 SLC39A1Q9NY26 324 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 CCDC39Q9UFE4 941 aa9.39□□□□□ -0.91
USP28-205ENST00000537706 CCL4P13236 92 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 GLB1P16278 677 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 CSTF2P33240 577 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP28-205ENST00000537706 LONP1P36776 959 aaKnown RBP9.38□□□□□ -0.91
USP28-205ENST00000537706 TKTL1P51854 596 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 YPEL5P62699 121 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 RPS24P62847 133 aaKnown RBP9.38□□□□□ -0.91
USP28-205ENST00000537706 ABHD18Q0P651 414 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 TRA2AQ13595 282 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP28-205ENST00000537706 C16orf72Q14CZ0 275 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 RABEP1Q15276 862 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 SP5Q6BEB4 398 aaPredicted RBP9.38□□□□□ -0.91
USP28-205ENST00000537706 MMS22LQ6ZRQ5 1243 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 APCDD1Q8J025 514 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 AGBL5Q8NDL9 886 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 TMIEQ8NEW7 156 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 KCTD13Q8WZ19 329 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 LLPHQ9BRT6 129 aaKnown RBP9.38□□□□□ -0.91
USP28-205ENST00000537706 IMPG2Q9BZV3 1241 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 LRRC4Q9HBW1 653 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 SLAMF7Q9NQ25 335 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 STK17AQ9UEE5 414 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 HMGXB4Q9UGU5 601 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms