RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ANO4Q32M45 955 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 ANKRD22Q5VYY1 191 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 BSPRYQ5W0U4 402 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 HEATR6Q6AI08 1181 aaKnown RBP12.22□□□□□ -0.45
CLIP1-208ENST00000537004 KLHDC10Q6PID8 442 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 TPGS1Q6ZTW0 290 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 HTR3DQ70Z44 454 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 NAT8LQ8N9F0 302 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 SERPINB12Q96P63 405 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 CSPG4P5Q96PW8 444 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 CWC15Q9P013 229 aaKnown RBP12.22□□□□□ -0.45
CLIP1-208ENST00000537004 TBC1D14Q9P2M4 693 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 SFMBT1Q9UHJ3 866 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 FZD10Q9ULW2 581 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 NAALADL1Q9UQQ1 740 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 SDK1Q7Z5N4 2213 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 OTOGLQ3ZCN5 2332 aa12.22□□□□□ -0.45
CLIP1-208ENST00000537004 SYNJ2BP-COX16A0A087WUM0 186 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 PROB1E7EW31 1015 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 GOLGA8MH3BSY2 632 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 K7EQS6 105 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 MAP3K6O95382 1288 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 FYNP06241 537 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 ZFXP17010 805 aaPredicted RBP12.21□□□□□ -0.45
CLIP1-208ENST00000537004 DRD1P21728 446 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 LSP1P33241 339 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 CCR3P51677 355 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 GAD2Q05329 585 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 FASTKD3Q14CZ7 662 aaKnown RBP12.21□□□□□ -0.45
CLIP1-208ENST00000537004 HIF1AQ16665 826 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 TNFAIP8L3Q5GJ75 292 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 CENPUQ71F23 418 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 PSTKQ8IV42 348 aaKnown RBP12.21□□□□□ -0.45
CLIP1-208ENST00000537004 PYROXD2Q8N2H3 581 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 RPLP0P6Q8NHW5 317 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 TTC25Q96NG3 672 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 USP29Q9HBJ7 922 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 SPHK2Q9NRA0 654 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 PLK2Q9NYY3 685 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 MARCH2Q9P0N8 246 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 COX16Q9P0S2 106 aa12.21□□□□□ -0.45
CLIP1-208ENST00000537004 SLC12A8A0AV02 714 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 BCLAF3A2AJT9 711 aaKnown RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 CFAP69A5D8W1 941 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 PRR23AA6NEV1 266 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 K7ESF4 209 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 CAPN9O14815 690 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 KCNN4O15554 427 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 MSI1O43347 362 aaKnown RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 TCEA3O75764 348 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 ADH1CP00326 375 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 ABHD2P08910 425 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 GOT1P17174 413 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 ARL4AP40617 200 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 BASP1P80723 227 aaKnown RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 PPARDQ03181 441 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 DEUP1Q05D60 604 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 KDSRQ06136 332 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 NME3Q13232 169 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 C2orf27AQ580R0 203 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 HP1BP3Q5SSJ5 553 aaPredicted RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 BTBD8Q5XKL5 378 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 MAMSTRQ6ZN01 415 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 ZBED8Q8IZ13 594 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 RTP4Q96DX8 246 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 CNOT10Q9H9A5 744 aaKnown RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 PIGVQ9NUD9 493 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 HELZP42694 1942 aaKnown RBP12.21□□□□□ -0.46
CLIP1-208ENST00000537004 SPTBN4Q9H254 2564 aa12.21□□□□□ -0.46
CLIP1-208ENST00000537004 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 TCRBV7S3A2A0A539 114 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 NEDD8-MDP1E9PL57 170 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 SMAPO00193 183 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ALOX15BO15296 676 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 TMEM63AO94886 807 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 LTFP02788 710 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 IVLP07476 585 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 RBL1P28749 1068 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 CORO1AP31146 461 aaKnown RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 NR2C2P49116 596 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ARL4CP56559 192 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 GBE1Q04446 702 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 PDIA2Q13087 525 aaKnown RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 SRSF5Q13243 272 aaKnown RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 STAT4Q14765 748 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ZNF528Q3MIS6 628 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 Q6ZNB5 142 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 SYNPOQ8N3V7 929 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ZBTB44Q8NCP5 570 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 CCDC77Q9BR77 488 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 PHACTR1Q9C0D0 580 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 TMPRSS4Q9NRS4 437 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 RCOR3Q9P2K3 495 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 LSM7Q9UK45 103 aaKnown RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 A0A087WUV0 522 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 CHURC1-FNTBB4DL54 471 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 TULP3O75386 442 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 BANF1O75531 89 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 NCAM1P13591 858 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms