RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 EFCAB3Q8N7B9 438 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 ZFP28Q8NHY6 868 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 CLIP3Q96DZ5 547 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 CEP44Q9C0F1 390 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.4■□□□□ 0.543e-7■□□□□ 9.3
SFSWAP-203ENST00000535236 PTPRMP28827 1452 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 CYP3A4P08684 503 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 HK2P52789 917 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 ALG11Q2TAA5 492 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 SLC44A4Q53GD3 710 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 CYP2R1Q6VVX0 501 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 CATSPERGQ6ZRH7 1159 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 FTHL17Q9BXU8 183 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 KLHL25Q9H0H3 589 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 ALG9Q9H6U8 611 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 PDE2AO00408 941 aaPredicted RBP18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 LTA4HP09960 611 aaKnown RBP18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 ITGAXP20702 1163 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 ME2P23368 584 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 PTSQ03393 145 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 POM121L1PQ3SYA9 428 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 SAMD4BQ5PRF9 694 aaKnown RBP18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 APOBEC3HQ6NTF7 200 aaKnown RBP18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 KYAT3Q6YP21 454 aaKnown RBP18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 HEATR4Q86WZ0 1026 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 GDPD5Q8WTR4 605 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 BTBD10Q9BSF8 475 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 C6orf62Q9GZU0 229 aaPredicted RBP18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 TMEM216Q9P0N5 145 aa18.4■□□□□ 0.54
SFSWAP-203ENST00000535236 DDX3XO00571 662 aaKnown RBP eCLIP18.39■□□□□ 0.544e-7■□□□□ 8.8
SFSWAP-203ENST00000535236 POLD2P49005 469 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 CCL23P55773 120 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 HELQQ8TDG4 1101 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 LRRC39Q96DD0 335 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 KAZALD1Q96I82 304 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 VPS45Q9NRW7 570 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 SPATA2Q9UM82 520 aa18.39■□□□□ 0.54
SFSWAP-203ENST00000535236 SLC15A5A6NIM6 579 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 F8VP50 259 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 ADH1AP07327 375 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 PSMB4P28070 264 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 PFKFB4Q16877 469 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 ZCCHC23Q6ZST2 131 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 RORBQ92753 470 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 REEP1Q9H902 201 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 VAV3Q9UKW4 847 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 MAPRE3Q9UPY8 281 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 A0A0B4J269 797 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 RALGDSQ12967 914 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 INTS11Q5TA45 600 aaKnown RBP18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 COPS5Q92905 334 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 REXO4Q9GZR2 422 aaKnown RBP18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 TNFSF13BQ9Y275 285 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 ABL2P42684 1182 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 USP41Q3LFD5 358 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 TTC7BQ86TV6 843 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 CENPIQ92674 756 aaPredicted RBP18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 ZYG11BQ9C0D3 744 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 PGK1P00558 417 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 RPA3P35244 121 aaPredicted RBP18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 RPL14P50914 215 aaKnown RBP18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 PRAMEF19Q5SWL8 479 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 IZUMO1Q8IYV9 350 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 KIAA0319LQ8IZA0 1049 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 OR6Y1Q8NGX8 325 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 BTBD9Q96Q07 612 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 RHBDL2Q9NX52 303 aa18.39■□□□□ 0.53
SFSWAP-203ENST00000535236 ASTN2O75129 1339 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 TPP1O14773 563 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 SCAMP3O14828 347 aaKnown RBP18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 HTR1BP28222 390 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 C15orf59Q2T9L4 293 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 AFTPHQ6ULP2 937 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 RNF148Q8N7C7 305 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 POU5F2Q8N7G0 328 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 OR52K1Q8NGK4 314 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 A0A0A0MRY4 1105 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 OR10H2O60403 315 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 PIGNO95427 931 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 BCL10O95999 233 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 SP3Q02447 781 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 DENND6AQ8IWF6 608 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 MIEF2Q96C03 454 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 SPATA13Q96N96 652 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 C9orf16Q9BUW7 83 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 SLC9A8Q9Y2E8 581 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 OR10H1Q9Y4A9 318 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 MED26O95402 600 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 ALADP13716 330 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 RERGQ96A58 199 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 CLEC4MQ9H2X3 399 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 LYVE1Q9Y5Y7 322 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 ATP9AO75110 1047 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 KRT33AO76009 404 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 CNGA2Q16280 664 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 FAM183BPQ6ZVS7 135 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 LPCAT2Q7L5N7 544 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 TMC3Q7Z5M5 1100 aa18.38■□□□□ 0.53
SFSWAP-203ENST00000535236 ZDHHC13Q8IUH4 622 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms