RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 RAB11FIP2Q7L804 512 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 MYLK4Q86YV6 388 aaPredicted RBP3.87□□□□□ -1.79
USP48-215ENST00000534705 ADGRF3Q8IZF5 1079 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 EXD3Q8N9H8 876 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 SLC44A5Q8NCS7 719 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 MCRS1Q96EZ8 462 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 LYZL4Q96KX0 146 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 PIMREGQ9BSJ6 248 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 HTATIP2Q9BUP3 242 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 CCDC134Q9H6E4 229 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 PRDM8Q9NQV8 689 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 HEY2Q9UBP5 337 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 IPO11Q9UI26 975 aaKnown RBP3.87□□□□□ -1.79
USP48-215ENST00000534705 CNTN6Q9UQ52 1028 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 HS3ST3B1Q9Y662 390 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 TTC21AQ8NDW8 1320 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 ANKRD36BQ8N2N9 1353 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 DISP2A7MBM2 1401 aa3.87□□□□□ -1.79
USP48-215ENST00000534705 SIPA1L3O60292 1781 aaPredicted RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 CASZ1Q86V15 1759 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 M0QYT0 321 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 TULP3O75386 442 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 KAT7O95251 611 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 SETQ01105 290 aaPredicted RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 BLMHQ13867 455 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 PGM5Q15124 567 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 TTC22Q5TAA0 569 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 ANKRD40Q6AI12 368 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 SLC44A2Q8IWA5 706 aaPredicted RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.86□□□□□ -1.79
USP48-215ENST00000534705 ARL14EPQ8N8R7 260 aaPredicted RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 SLC2A12Q8TD20 617 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 WDR83Q9BRX9 315 aaKnown RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 ABHD14AQ9BUJ0 271 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 TXNRD2Q9NNW7 524 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 SEMA4BQ9NPR2 832 aaPredicted RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 LIN7CQ9NUP9 197 aaKnown RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 TMLHEQ9NVH6 421 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 TERF2IPQ9NYB0 399 aa3.86□□□□□ -1.79
USP48-215ENST00000534705 C19orf53Q9UNZ5 99 aaPredicted RBP3.86□□□□□ -1.79
USP48-215ENST00000534705 PAPPAQ13219 1627 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 COL5A3P25940 1745 aaPredicted RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 A0A0G2JK05 382 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 KIF28PB7ZC32 967 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ACKR2O00590 384 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ACTL6BO94805 426 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 TNFRSF6BO95407 300 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 TOMM40O96008 361 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 CSTBP04080 98 aaKnown RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 HSPA5P11021 654 aaKnown RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 THBS3P49746 956 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 FAM3BP58499 235 aaPredicted RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 DLGAP5Q15398 846 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ZRSR2Q15696 482 aaKnown RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 KIAA1755Q5JYT7 1200 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ZNF569Q5MCW4 686 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 LIN54Q6MZP7 749 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ERAP2Q6P179 960 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 C1orf228Q6PIY5 440 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 Q6ZTC4 211 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 USP43Q70EL4 1123 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 IRF2BP2Q7Z5L9 587 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 CACNA2D3Q8IZS8 1091 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 MMP21Q8N119 569 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 STT3BQ8TCJ2 826 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ATP2A3Q93084 1043 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ZNF347Q96SE7 839 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 SCNM1Q9BWG6 230 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 TMEM120AQ9BXJ8 343 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 THSD1Q9NS62 852 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 ZBTB40Q9NUA8 1239 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 POT1Q9NUX5 634 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 DACT1Q9NYF0 836 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 COPG1Q9Y678 874 aaKnown RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 UBR3Q6ZT12 1888 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 MYH14Q7Z406 1995 aaKnown RBP3.85□□□□□ -1.79
USP48-215ENST00000534705 CRB1P82279 1406 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 NCAPD2Q15021 1401 aa3.85□□□□□ -1.79
USP48-215ENST00000534705 LRP5O75197 1615 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 C5P01031 1676 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 ADAMTS7Q9UKP4 1686 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3DA0A087WVF3 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3IA0A087WXS9 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3EA0A087X179 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3KA0A087X1G2 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3BA6NDS4 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3FA6NER0 549 aaPredicted RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 ZNF814B7Z6K7 855 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3LB9A6J9 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 MCIDASD6RGH6 385 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 WNT1P04628 370 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 ALDOCP09972 364 aaKnown RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3HP0C7X1 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 CYP19A1P11511 503 aaPredicted RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 TBXAS1P24557 533 aaPredicted RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 STAT1P42224 750 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 ALDH7A1P49419 539 aaKnown RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 MCM2P49736 904 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 PNLIPRP1P54315 467 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 ADPRHP54922 357 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms