RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FARP1Q9Y4F1 1045 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 CEP192Q8TEP8 1941 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ZNF292O60281 2723 aa15.33■□□□□ 0.05
CPSF1-208ENST00000532560 ARHGAP42A6NI28 874 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 SOWAHDA6NJG2 315 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 C1QTNF3-AMACRE9PGA6 284 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 NDUFA10O95299 355 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 IL1BP01584 269 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 SLC8A1P32418 973 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 ACSL1P33121 698 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 SSR1P43307 286 aaKnown RBP15.33■□□□□ 0.04
CPSF1-208ENST00000532560 MAGEA1P43355 309 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 RECQLP46063 649 aaPredicted RBP15.33■□□□□ 0.04
CPSF1-208ENST00000532560 HADHBP55084 474 aaKnown RBP15.33■□□□□ 0.04
CPSF1-208ENST00000532560 FAM46CQ5VWP2 391 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 PRR23CQ6ZRP0 262 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 FAM124AQ86V42 546 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 ZNF354CQ86Y25 554 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 CPNE8Q86YQ8 564 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 SYT12Q8IV01 421 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 PLPP6Q8IY26 295 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 KIAA2013Q8IYS2 634 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 AADATQ8N5Z0 425 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 NPWQ8N729 165 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 FAM131CQ96AQ9 280 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 BTBD1Q9H0C5 482 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 TNKS2Q9H2K2 1166 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 FBXL12Q9NXK8 326 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.33■□□□□ 0.04
CPSF1-208ENST00000532560 PILRBQ9UKJ0 227 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 NCKAP1Q9Y2A7 1128 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 FCF1Q9Y324 198 aaKnown RBP15.33■□□□□ 0.04
CPSF1-208ENST00000532560 ACTL7AQ9Y615 435 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 RALGAPA1Q6GYQ0 2036 aa15.33■□□□□ 0.04
CPSF1-208ENST00000532560 A0A1W2PP55 124 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 BUB1O43683 1085 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 BNIP3LO60238 219 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 RNASEH2AO75792 299 aaKnown RBP15.32■□□□□ 0.04
CPSF1-208ENST00000532560 SEMA4FO95754 770 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 GSRP00390 522 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 PRNPP04156 253 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 CTSLP07711 333 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 KRT7P08729 469 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 ITPKAP23677 461 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 CHRNA3P32297 505 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 DRD3P35462 400 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 GJC1P36383 396 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 ARSEP51690 589 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 CDH6P55285 790 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 TAS2R40P59535 323 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 LMNB2Q03252 620 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 KRT81Q14533 505 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 MESDQ14696 234 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 INO80DQ53TQ3 878 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-208ENST00000532560 DPY19L3Q6ZPD9 716 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 ARHGAP12Q8IWW6 846 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 DEFB119Q8N690 84 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 TMIEQ8NEW7 156 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 PIP4K2CQ8TBX8 421 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 GANCQ8TET4 914 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 PIGKQ92643 395 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 CELF6Q96J87 481 aaKnown RBP15.32■□□□□ 0.04
CPSF1-208ENST00000532560 OMDQ99983 421 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 SLC39A8Q9C0K1 460 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 PDFQ9HBH1 243 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 SARDHQ9UL12 918 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 PCDHA13Q9Y5I0 950 aa15.32■□□□□ 0.04
CPSF1-208ENST00000532560 EPN1Q9Y6I3 576 aaPredicted RBP15.32■□□□□ 0.04
CPSF1-208ENST00000532560 NUMA1Q14980 2115 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 A0A0A6YYK5 440 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-208ENST00000532560 TMEM110-MUSTN1A8MSY1 372 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 METTL12A8MUP2 240 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 MEI4A8MW99 385 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 SLC7A4O43246 635 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 PRAMEF11O60813 436 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 TMCC1O94876 653 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 IPO7O95373 1038 aaKnown RBP15.31■□□□□ 0.04
CPSF1-208ENST00000532560 SLC1A1P43005 524 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 PAPOLAP51003 745 aaKnown RBP15.31■□□□□ 0.04
CPSF1-208ENST00000532560 CCNHP51946 323 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-208ENST00000532560 METAP1P53582 386 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 DPYSL3Q14195 570 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 PDK2Q15119 407 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 CCDC6Q16204 474 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 CARD16Q5EG05 197 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 WDR45BQ5MNZ6 344 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 SYCP2LQ5T4T6 812 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 TMCO3Q6UWJ1 677 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 RABEPKQ7Z6M1 372 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 TMEM139Q8IV31 216 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 HDDC3Q8N4P3 179 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 SPC24Q8NBT2 197 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 CHST14Q8NCH0 376 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 DNASE2BQ8WZ79 361 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 BAG1Q99933 345 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-208ENST00000532560 ZNF670Q9BS34 389 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 NEUROG2Q9H2A3 272 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 IL36AQ9UHA7 158 aa15.31■□□□□ 0.04
CPSF1-208ENST00000532560 EVLQ9UI08 416 aaPredicted RBP15.31■□□□□ 0.04
CPSF1-208ENST00000532560 ATXN2Q99700 1313 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms