RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TRIM2Q9C040 744 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 CXorf56Q9H5V9 222 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 SNTG1Q9NSN8 517 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 TFCP2L1Q9NZI6 479 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 IL1RAPL1Q9NZN1 696 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 NLKQ9UBE8 527 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 CDH22Q9UJ99 828 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 INTS6Q9UL03 887 aaKnown RBP3.19□□□□□ -1.9
CD44-234ENST00000531873 ICKQ9UPZ9 632 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 CLDN16Q9Y5I7 305 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 LYVE1Q9Y5Y7 322 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 EMSYQ7Z589 1322 aa3.19□□□□□ -1.9
CD44-234ENST00000531873 FAM237BA0A1B0GVD1 139 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TARSL2A2RTX5 802 aaKnown RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 SYNDIG1LA6NDD5 238 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 OR6C68A6NDL8 312 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 CXorf65A6NEN9 183 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 B4DLN1 442 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 PTGES3LE9PB15 166 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SNAP23O00161 211 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 P4HA2O15460 535 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 LIASO43766 372 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ORC4O43929 436 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 USP12O75317 370 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 GCATO75600 419 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SEC31AO94979 1220 aaKnown RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 OR2C1O95371 312 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 STARD3NLO95772 234 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 DDAH2O95865 285 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SERPINC1P01008 464 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 DNTTP04053 509 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 GALTP07902 379 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 HNRNPCP07910 306 aaKnown RBP eCLIP3.18□□□□□ -1.9
CD44-234ENST00000531873 CSH1P0DML2 217 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 CSH2P0DML3 217 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 AKR1A1P14550 325 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ST6GAL1P15907 406 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 KRT4P19013 534 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 IL11P20809 199 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 NFKBIAP25963 317 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 FMO4P31512 558 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TTKP33981 857 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 PSMB10P40306 273 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 CPA2P48052 419 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 CTCFP49711 727 aaPredicted RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 BLKP51451 505 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TGFB2P61812 414 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 PSMC6P62333 389 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 HOXA4Q00056 320 aaPredicted RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 TAP1Q03518 808 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 IRF3Q14653 427 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ME3Q16798 604 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ALG11Q2TAA5 492 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 RILPL1Q5EBL4 403 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TSTD2Q5T7W7 516 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TXNDC8Q6A555 127 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TTI2Q6NXR4 508 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 RBM44Q6ZP01 1051 aaKnown RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 MOB3CQ70IA8 216 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ZNF627Q7L945 461 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 RRM2BQ7LG56 351 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SLC46A3Q7Z3Q1 461 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 KRT77Q7Z794 578 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 FAM160B2Q86V87 743 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 KLBQ86Z14 1044 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 GHDCQ8N2G8 530 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SRBD1Q8N5C6 995 aaKnown RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 FRMD1Q8N878 549 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SCFD2Q8WU76 684 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 KAT2AQ92830 837 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 FRG2BQ96QU4 278 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 FCRL5Q96RD9 977 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 SLF1Q9BQI6 1058 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 MXD3Q9BW11 206 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 TM2D2Q9BX73 214 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 STRA6Q9BX79 667 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 IKZF4Q9H2S9 585 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 POLR1BQ9H9Y6 1135 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 CYP4F11Q9HBI6 524 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ERVK-5Q9HDB9 667 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ATP8A2Q9NTI2 1148 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ARL8BQ9NVJ2 186 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 NCKIPSDQ9NZQ3 722 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 KIAA1456Q9P272 454 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ING1Q9UK53 422 aaPredicted RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 ZNF215Q9UL58 517 aaPredicted RBP3.18□□□□□ -1.9
CD44-234ENST00000531873 SNX8Q9Y5X2 465 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 HS3ST3A1Q9Y663 406 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 ADGRF5Q8IZF2 1346 aa3.18□□□□□ -1.9
CD44-234ENST00000531873 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 A8MZ25 164 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TARM1B6A8C7 271 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TAF4O00268 1085 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 BCAT2O15382 392 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 STRNO43815 780 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 ERAL1O75616 437 aaKnown RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 CBX6O95503 412 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 EIF2S1P05198 315 aaKnown RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 HEXAP06865 529 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 RARGP13631 454 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms