RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 NANOS2P60321 138 aaKnown RBP5.03□□□□□ -1.6
CD44-223ENST00000526553 ROR2Q01974 943 aaKnown RBP5.03□□□□□ -1.6
CD44-223ENST00000526553 INO80DQ53TQ3 878 aaPredicted RBP5.03□□□□□ -1.6
CD44-223ENST00000526553 DCAF12L2Q5VW00 463 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 TBC1D9BQ66K14 1250 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 TMEM71Q6P5X7 295 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 GJB7Q6PEY0 223 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 CTU1Q7Z7A3 348 aaKnown RBP5.03□□□□□ -1.6
CD44-223ENST00000526553 B4GALNT2Q8NHY0 566 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 UBA5Q9GZZ9 404 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 CATSPERBQ9H7T0 1116 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 PLK2Q9NYY3 685 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 NCKIPSDQ9NZQ3 722 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 CDH22Q9UJ99 828 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 PCDHA7Q9UN72 937 aa5.03□□□□□ -1.6
CD44-223ENST00000526553 CYP1A2P05177 515 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 AVPR1AP37288 418 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 ZP1P60852 638 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 GPR18Q14330 331 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 IL13RA2Q14627 380 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 ANKRD1Q15327 319 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 AP5B1Q2VPB7 878 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 OTUD1Q5VV17 481 aaPredicted RBP5.02□□□□□ -1.61
CD44-223ENST00000526553 HEPHL1Q6MZM0 1159 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 SERPINA11Q86U17 422 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 TRIM74Q86UV6 250 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 TRIM73Q86UV7 250 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 CADM3Q8N126 398 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 HORMAD2Q8N7B1 307 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 TRIM63Q969Q1 353 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 PYM1Q9BRP8 204 aaKnown RBP5.02□□□□□ -1.61
CD44-223ENST00000526553 NPLQ9BXD5 320 aaPredicted RBP5.02□□□□□ -1.61
CD44-223ENST00000526553 CTDSP1Q9GZU7 261 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 TLR8Q9NR97 1041 aaKnown RBP5.02□□□□□ -1.61
CD44-223ENST00000526553 HDAC6Q9UBN7 1215 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 SEL1LQ9UBV2 794 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 PLEKHB1Q9UF11 243 aaPredicted RBP5.02□□□□□ -1.61
CD44-223ENST00000526553 SUFUQ9UMX1 484 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 GDAQ9Y2T3 454 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 GPR52Q9Y2T5 361 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 CLDN16Q9Y5I7 305 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 RAI2Q9Y5P3 530 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 CKAP5Q14008 2032 aa5.02□□□□□ -1.61
CD44-223ENST00000526553 SPRY3O43610 288 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 DHX16O60231 1041 aaKnown RBP5.01□□□□□ -1.61
CD44-223ENST00000526553 LCATP04180 440 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 MMP3P08254 477 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 CPA1P15085 419 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 YWHAQP27348 245 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 CCKARP32238 428 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 CDKN2AP42771 156 aaKnown RBP5.01□□□□□ -1.61
CD44-223ENST00000526553 PPFIA1Q13136 1202 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 RPE65Q16518 533 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 TMEM95Q3KNT9 176 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 PDXDC1Q6P996 788 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 Q6ZTK2 550 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 TMC8Q8IU68 726 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 ANKRD42Q8N9B4 389 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 SETD9Q8NE22 299 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 TMEM163Q8TC26 289 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 SH3KBP1Q96B97 665 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 RNFT2Q96EX2 444 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 COG8Q96MW5 612 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 TMEM204Q9BSN7 226 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 POLDIP3Q9BY77 421 aaKnown RBP5.01□□□□□ -1.61
CD44-223ENST00000526553 PPCSQ9HAB8 311 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 HIF1ANQ9NWT6 349 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 INSL5Q9Y5Q6 135 aa5.01□□□□□ -1.61
CD44-223ENST00000526553 IGKV2D-30A0A075B6S6 120 aa5□□□□□ -1.61
CD44-223ENST00000526553 CCDC189A1A4V9 331 aa5□□□□□ -1.61
CD44-223ENST00000526553 BECN2A8MW95 431 aa5□□□□□ -1.61
CD44-223ENST00000526553 MS4A18H0YCH9 400 aa5□□□□□ -1.61
CD44-223ENST00000526553 HSPB6O14558 160 aa5□□□□□ -1.61
CD44-223ENST00000526553 RGS14O43566 566 aa5□□□□□ -1.61
CD44-223ENST00000526553 TSPAN3O60637 253 aa5□□□□□ -1.61
CD44-223ENST00000526553 CBX6O95503 412 aa5□□□□□ -1.61
CD44-223ENST00000526553 ENO3P13929 434 aaPredicted RBP5□□□□□ -1.61
CD44-223ENST00000526553 GNLYP22749 145 aa5□□□□□ -1.61
CD44-223ENST00000526553 HNF1BP35680 557 aa5□□□□□ -1.61
CD44-223ENST00000526553 DPP6P42658 865 aa5□□□□□ -1.61
CD44-223ENST00000526553 PPP3CCP48454 512 aa5□□□□□ -1.61
CD44-223ENST00000526553 TMPRSS3P57727 454 aa5□□□□□ -1.61
CD44-223ENST00000526553 TRAF1Q13077 416 aa5□□□□□ -1.61
CD44-223ENST00000526553 DNTTIP2Q5QJE6 756 aaKnown RBP5□□□□□ -1.61
CD44-223ENST00000526553 SH2D4BQ5SQS7 431 aa5□□□□□ -1.61
CD44-223ENST00000526553 NCAPH2Q6IBW4 605 aa5□□□□□ -1.61
CD44-223ENST00000526553 FBXL14Q8N1E6 418 aa5□□□□□ -1.61
CD44-223ENST00000526553 CEP76Q8TAP6 659 aa5□□□□□ -1.61
CD44-223ENST00000526553 SLC35F5Q8WV83 523 aa5□□□□□ -1.61
CD44-223ENST00000526553 OIT3Q8WWZ8 545 aa5□□□□□ -1.61
CD44-223ENST00000526553 MIB2Q96AX9 1013 aa5□□□□□ -1.61
CD44-223ENST00000526553 TWNKQ96RR1 684 aa5□□□□□ -1.61
CD44-223ENST00000526553 DCLK3Q9C098 648 aa5□□□□□ -1.61
CD44-223ENST00000526553 TTC12Q9H892 705 aaPredicted RBP5□□□□□ -1.61
CD44-223ENST00000526553 FZD10Q9ULW2 581 aa5□□□□□ -1.61
CD44-223ENST00000526553 EVPLQ92817 2033 aa5□□□□□ -1.61
CD44-223ENST00000526553 TARSL2A2RTX5 802 aaKnown RBP4.99□□□□□ -1.61
CD44-223ENST00000526553 VWA3AA6NCI4 1184 aa4.99□□□□□ -1.61
CD44-223ENST00000526553 DDTLA6NHG4 134 aaPredicted RBP4.99□□□□□ -1.61
CD44-223ENST00000526553 OR6C75A6NL08 312 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms