RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SKOR1P84550 965 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 CDK17Q00537 523 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 NME3Q13232 169 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 ARHGAP44Q17R89 818 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 RABGAP1LQ5R372 815 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 FAM46CQ5VWP2 391 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 LRRC69Q6ZNQ3 347 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 GPR155Q7Z3F1 870 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 BNIPLQ7Z465 357 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 CCDC117Q8IWD4 279 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-201ENST00000526271 ELOA2Q8IYF1 753 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-201ENST00000526271 OR7D4Q8NG98 312 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 KLF6Q99612 283 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-201ENST00000526271 TNKS2Q9H2K2 1166 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 MPP6Q9NZW5 540 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 SLC25A13Q9UJS0 675 aa14.61□□□□□ -0.07
CPSF1-201ENST00000526271 SCN8AQ9UQD0 1980 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 IGLV3-10A0A075B6K4 115 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 EIF4E1BA6NMX2 242 aaKnown RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 C1QTNF3-AMACRE9PGA6 284 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 M0QYT0 321 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 KPNA3O00505 521 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 HSF2BPO75031 334 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 GADD45BO75293 160 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 CLDN11O75508 207 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 DXOO77932 396 aaKnown RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 KRT10P13645 584 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 TGM2P21980 687 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 NNMTP40261 264 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 PDX1P52945 283 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 CDH4P55283 916 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 ZNF177Q13360 481 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 DRAP1Q14919 205 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 ARSIQ5FYB1 569 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 DPY19L3Q6ZPD9 716 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 NYAP1Q6ZVC0 841 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 SLC26A9Q7LBE3 791 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 DSG4Q86SJ6 1040 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 FAM181AQ8N9Y4 354 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 TMIEQ8NEW7 156 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 ZNF397Q8NF99 534 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 TTC9Q92623 222 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 GBP4Q96PP9 640 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 SIK2Q9H0K1 926 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 TCEAL2Q9H3H9 227 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 GGT7Q9UJ14 662 aa14.6□□□□□ -0.07
CPSF1-201ENST00000526271 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 TLN1Q9Y490 2541 aaKnown RBP14.6□□□□□ -0.07
CPSF1-201ENST00000526271 TEX51A0A1B0GUA7 166 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 PYCARD-AS1I3L0S3 204 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 RRP8O43159 456 aaKnown RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 MED7O43513 233 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 CSO75390 466 aaKnown RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 LEFTY1O75610 366 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 ENDOD1O94919 500 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 HNRNPA2B1P22626 353 aaKnown RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 PON1P27169 355 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 GKP32189 559 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 ACTN2P35609 894 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 ABL2P42684 1182 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 GABREP78334 506 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 ARF5P84085 180 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 E2F1Q01094 437 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 SLC6A3Q01959 620 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 EIF2B5Q13144 721 aaKnown RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 C2CD6Q53TS8 623 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 NEK5Q6P3R8 708 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 C22orf39Q6P5X5 142 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 Q6ZSR6 202 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 C11orf57Q6ZUT1 292 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 ERN2Q76MJ5 926 aaKnown RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 TFAP2DQ7Z6R9 452 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 SLC47A2Q86VL8 602 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 LSM14AQ8ND56 463 aaKnown RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 ZNF548Q8NEK5 533 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-201ENST00000526271 GRIN3AQ8TCU5 1115 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 BAP1Q92560 729 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 TRIM62Q9BVG3 475 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 CALN1Q9BXU9 219 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 HDAC8Q9BY41 377 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 MAGEB5Q9BZ81 275 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 TKTL2Q9H0I9 626 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 FADS3Q9Y5Q0 445 aa14.59□□□□□ -0.07
CPSF1-201ENST00000526271 FOXN3O00409 490 aaPredicted RBP14.58□□□□□ -0.08
CPSF1-201ENST00000526271 SCAMP1O15126 338 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 MAGEC1O60732 1142 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 USP12O75317 370 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 SLC2A3P11169 496 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 NOS2P35228 1153 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 FLT3P36888 993 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 LSSP48449 732 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 DAB2P98082 770 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 CFHR1Q03591 330 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 EFHC1Q5JVL4 640 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 PERM1Q5SV97 790 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 GUSBP11Q6P575 273 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 DCAF4L2Q8NA75 395 aa14.58□□□□□ -0.08
CPSF1-201ENST00000526271 ATP11CQ8NB49 1132 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms