RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 AGAP14A8MT82 685 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 FOXD2O60548 495 aaPredicted RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 CBX6O95503 412 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 ADAP00813 363 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 TUBB4AP04350 444 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 GALTP07902 379 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 FCGR2AP12318 317 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 AKR1A1P14550 325 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 MAKP20794 623 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 FMO4P31512 558 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 CLK3P49761 638 aaKnown RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 HSPA2P54652 639 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 RHAGQ02094 409 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 DUSP28Q4G0W2 176 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 GRASPQ7Z6J2 395 aaPredicted RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 TFAP2DQ7Z6R9 452 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 C16orf71Q8IYS4 520 aaPredicted RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 SRBD1Q8N5C6 995 aaKnown RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 C11orf65Q8NCR3 313 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 CADM4Q8NFZ8 388 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 OR52N4Q8NGI2 321 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 SH3RF3Q8TEJ3 882 aaPredicted RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 SCFD2Q8WU76 684 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 IP6K1Q92551 441 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 INTS12Q96CB8 462 aaKnown RBP7.89□□□□□ -1.15
LSM1-202ENST00000520286 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.89□□□□□ -1.15
LSM1-202ENST00000520286 EHD2Q9NZN4 543 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 PCDHGB4Q9UN71 923 aa7.89□□□□□ -1.15
LSM1-202ENST00000520286 CD109Q6YHK3 1445 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.88□□□□□ -1.15
LSM1-202ENST00000520286 TMEM247A6NEH6 219 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 GJB3O75712 270 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 JTBO76095 146 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 CSH1P0DML2 217 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 CSH2P0DML3 217 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 PPARGP37231 505 aaPredicted RBP7.88□□□□□ -1.15
LSM1-202ENST00000520286 PBX3P40426 434 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 SKIV2L2P42285 1042 aaKnown RBP7.88□□□□□ -1.15
LSM1-202ENST00000520286 OLR1P78380 273 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 EFEMP1Q12805 493 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 C10orf76Q5T2E6 689 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 ZKSCAN2Q63HK3 967 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 NCEH1Q6PIU2 408 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 IL20RBQ6UXL0 311 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 TADA2BQ86TJ2 420 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 PAQR4Q8N4S7 273 aaPredicted RBP7.88□□□□□ -1.15
LSM1-202ENST00000520286 WDTC1Q8N5D0 677 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 SMARCE1Q969G3 411 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 P2RY11Q96G91 374 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 CALML4Q96GE6 196 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 ERVK-5Q9HDB9 667 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 ENTPD7Q9NQZ7 604 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 C20orf141Q9NUB4 165 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 BABAM1Q9NWV8 329 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 ZNF70Q9UC06 446 aaPredicted RBP7.88□□□□□ -1.15
LSM1-202ENST00000520286 SLCO3A1Q9UIG8 710 aa7.88□□□□□ -1.15
LSM1-202ENST00000520286 FAM237BA0A1B0GVD1 139 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 GRID2IPA4D2P6 1211 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SYNDIG1LA6NDD5 238 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 KCNJ18B7U540 433 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 RRHO14718 337 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 P4HA2O15460 535 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 EIF2S1P05198 315 aaKnown RBP7.87□□□□□ -1.15
LSM1-202ENST00000520286 RARGP13631 454 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 PLA2G5P39877 138 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SOX2P48431 317 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SNX16P57768 344 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SIM1P81133 766 aaPredicted RBP7.87□□□□□ -1.15
LSM1-202ENST00000520286 CYP4A11Q02928 519 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 ABHD18Q0P651 414 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 CCDC96Q2M329 555 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 TTI2Q6NXR4 508 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 PRSS45Q7RTY3 260 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SLC46A3Q7Z3Q1 461 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 UEVLDQ8IX04 471 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 FRMD1Q8N878 549 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 ARHGEF2Q92974 986 aaKnown RBP7.87□□□□□ -1.15
LSM1-202ENST00000520286 REPS1Q96D71 796 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SNTG1Q9NSN8 517 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SH3BP4Q9P0V3 963 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 KIAA1456Q9P272 454 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 TNFSF13BQ9Y275 285 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 TMEM5Q9Y2B1 443 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 SNX8Q9Y5X2 465 aa7.87□□□□□ -1.15
LSM1-202ENST00000520286 UBE2Q2LH0YL09 131 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 HNRNPCL1O60812 293 aaKnown RBP7.86□□□□□ -1.15
LSM1-202ENST00000520286 ACSL1P33121 698 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 PSMB10P40306 273 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 RARRES1P49788 294 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 BLKP51451 505 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 GOLGA8DPQ0D2H9 430 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 GSTA3Q16772 222 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 EDRF1Q3B7T1 1238 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 C5orf22Q49AR2 442 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 FAM171A1Q5VUB5 890 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 CYP20A1Q6UW02 462 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 FAM160B2Q86V87 743 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 TMEM217Q8N7C4 229 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 TMEM116Q8NCL8 245 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 ZFPM2Q8WW38 1151 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms