RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GPD2P43304 727 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 GSSP48637 474 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PCID2Q5JVF3 399 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 ADGRD1Q6QNK2 874 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 LRRC52Q8N7C0 313 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 JADE3Q92613 823 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 HDAC10Q969S8 669 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 BORCS6Q96GS4 357 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 DYRK4Q9NR20 520 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 FAM105AQ9NUU6 356 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 RRN3Q9NYV6 651 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 ATXN10Q9UBB4 475 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 CITO14578 2027 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 SYNCRIPO60506 623 aaKnown RBP11.86□□□□□ -0.51
SYNPO-204ENST00000519664 LGR5O75473 907 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 COX4I1P13073 169 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PBLDP30039 288 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-204ENST00000519664 ASPAP45381 313 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 CHRNB3Q05901 458 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 DUSP28Q4G0W2 176 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 ANKS6Q68DC2 871 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 MILR1Q7Z6M3 343 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 CFAP52Q8N1V2 620 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 TRPC4APQ8TEL6 797 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PPP1R10Q96QC0 940 aaKnown RBP11.86□□□□□ -0.51
SYNPO-204ENST00000519664 VAT1Q99536 393 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM109Q9BVC6 243 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 FBXO44Q9H4M3 255 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 TAS2R13Q9NYV9 303 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 MYBPHLA2RUH7 354 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PSMD12O00232 456 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-204ENST00000519664 H2AFYO75367 372 aaKnown RBP11.86□□□□□ -0.51
SYNPO-204ENST00000519664 CRABP2P29373 138 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PWP1Q13610 501 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 GLT6D1Q7Z4J2 308 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PIGWQ7Z7B1 504 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 DCBLD1Q8N8Z6 715 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 ATAD1Q8NBU5 361 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 FNIP1Q8TF40 1166 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 FBXL18Q96ME1 805 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 TBCDQ9BTW9 1192 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 LRMDAQ9H2I8 198 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 ENTPD7Q9NQZ7 604 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM161AQ9NX61 479 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 PCDHGC3Q9UN70 934 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 BTRCQ9Y297 605 aa11.86□□□□□ -0.51
SYNPO-204ENST00000519664 BTBD19C9JJ37 291 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 C9JVG2 144 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 HDAC3O15379 428 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 ZNF682O95780 498 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 MPSTP25325 297 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PGS1Q32NB8 556 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 MSS51Q4VC12 460 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 LACTB2Q53H82 288 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 AMIGO2Q86SJ2 522 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CACUL1Q86Y37 369 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 HPS6Q86YV9 775 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 LZTR1Q8N653 840 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 RIN3Q8TB24 985 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 DNAJB14Q8TBM8 379 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 WDR60Q8WVS4 1066 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CASP10Q92851 521 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 RNF145Q96MT1 663 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CIPCQ9C0C6 399 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 ARHGEF4Q9NR80 690 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TMPRSS4Q9NRS4 437 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 ABCC13Q9NSE7 274 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 RBPJLQ9UBG7 517 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 NDUFAF1Q9Y375 327 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TBC1D4O60343 1298 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 ST8SIA6P61647 398 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TRAF2Q12933 501 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PTP4A2Q12974 167 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CCDC85BQ15834 202 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 KHDC1Q4VXA5 237 aaKnown RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 LPCAT4Q643R3 524 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM130Q8N3G9 435 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PTGR2Q8N8N7 351 aaPredicted RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PCSK9Q8NBP7 692 aaKnown RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PPTC7Q8NI37 304 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TMEM165Q9HC07 324 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 TXNRD2Q9NNW7 524 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 EFR3BQ9Y2G0 817 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CFAP99D6REC4 459 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 H0YGN5 161 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 ATP6V1C1P21283 382 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 ATP6V1E1P36543 226 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 WNT3AP56704 352 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 LILRA4P59901 499 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 SEMA5AQ13591 1074 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 CYP51A1Q16850 503 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 DHFR2Q86XF0 187 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 FAM126BQ8IXS8 530 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 MICU2Q8IYU8 434 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 FIG4Q92562 907 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 PRKD2Q9BZL6 878 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 RERGLQ9H628 205 aa11.85□□□□□ -0.51
SYNPO-204ENST00000519664 EXOSC4Q9NPD3 245 aaKnown RBP11.85□□□□□ -0.51
SYNPO-204ENST00000519664 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms