RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ADRA1BP35368 520 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 GABRB2P47870 512 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 WASHC5Q12768 1159 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 CSTF3Q12996 717 aaKnown RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 LACTB2Q53H82 288 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 IL27RAQ6UWB1 636 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 PIWIL4Q7Z3Z4 852 aaKnown RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 FBXW8Q8N3Y1 598 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 OR56A4Q8NGH8 313 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 ZDHHC18Q9NUE0 388 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 NMRK1Q9NWW6 199 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 MORF4L1Q9UBU8 362 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 STXBP5LQ9Y2K9 1186 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 GRIN2DO15399 1336 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 TBKBP1A7MCY6 615 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 LZTS3O60299 673 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 ATP5BP06576 529 aaKnown RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 HSMCR30P0CW71 290 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 ZNF7P17097 686 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 PSMB9P28065 219 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 PPP4R4Q6NUP7 873 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 NECAB2Q7Z6G3 386 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 YAF2Q8IY57 180 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 LRRC52Q8N7C0 313 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 ZMAT2Q96NC0 199 aaKnown RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 SMAD5Q99717 465 aaKnown RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 DENND2DQ9H6A0 471 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 COMMD8Q9NX08 183 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 RAP2CQ9Y3L5 183 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 C1orf232A0A0U1RR37 186 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 DDX5P17844 614 aaKnown RBP12.83□□□□□ -0.35
USP53-209ENST00000514665 NELFEP18615 380 aaKnown RBP12.83□□□□□ -0.35
USP53-209ENST00000514665 FOXN2P32314 431 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 GRM5P41594 1212 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 BRCC3P46736 316 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 GDF10P55107 478 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 LBX2Q6XYB7 198 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 ANKS3Q6ZW76 656 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 GPSM1Q86YR5 675 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 SPPL2AQ8TCT8 520 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 ZFP42Q96MM3 310 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 KLHL5Q96PQ7 755 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 SEPT3Q9UH03 358 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 CLCA2Q9UQC9 943 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 BTRCQ9Y297 605 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 COQ4Q9Y3A0 265 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 MYO9BQ13459 2157 aa12.83□□□□□ -0.35
USP53-209ENST00000514665 AFDNP55196 1824 aaKnown RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 ABCB1P08183 1280 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 UNGP13051 313 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 ALOX15P16050 662 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 LBPP18428 481 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 GPC1P35052 558 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ARL2P36404 184 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 RAB27AP51159 221 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 RAB10P61026 200 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 STARD3Q14849 445 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 VWA5B1Q5TIE3 1220 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 ZBTB46Q86UZ6 589 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 BBS7Q8IWZ6 715 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 C12orf50Q8NA57 414 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 MAGEE2Q8TD90 523 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 OSCP1Q8WVF1 389 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 CASP10Q92851 521 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 HDAC10Q969S8 669 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 MYLPFQ96A32 169 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 VPS33AQ96AX1 596 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 RAD51BO15315 384 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 BIRC5O15392 142 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ARIH2O95376 493 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 EGFRP00533 1210 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 URODP06132 367 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 CFHP08603 1231 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ETS2P15036 469 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 RAP1GDS1P52306 607 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 SREBF2Q12772 1141 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 PTPRNQ16849 979 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ZNF284Q2VY69 593 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 PYROXD2Q8N2H3 581 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 FNIP1Q8TF40 1166 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 EMID1Q96A84 441 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 VPS45Q9NRW7 570 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 NR2E3Q9Y5X4 410 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 PLIN4Q96Q06 1357 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 MOXD2PA6NHM9 499 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 STK25O00506 426 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ARHGEF9O43307 516 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 MFSD11O43934 449 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 SNRPB2P08579 225 aaKnown RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 PCNAP12004 261 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 WNT3AP56704 352 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 IL2P60568 153 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 PDK3Q15120 406 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ZIK1Q3SY52 487 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 SH3PXD2AQ5TCZ1 1133 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 FAM35AQ86V20 835 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 SLC4A11Q8NBS3 891 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 UTP15Q8TED0 518 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms