RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TAPT1Q6NXT6 567 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 LAYNQ6UX15 382 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 RP9Q8TA86 221 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 CYP4F12Q9HCS2 524 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 UBQLN1Q9UMX0 589 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 hCG_2014768A0A024R1R8 64 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 XPO1O14980 1071 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 DLX3O60479 287 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 DDHD2O94830 711 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 MT-CYBP00156 380 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 CYP2B6P20813 491 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 ADGRE1Q14246 886 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 ANO4Q32M45 955 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 PIGGQ5H8A4 983 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 WSCD1Q658N2 575 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 IL31Q6EBC2 164 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 DGCR14Q96DF8 476 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 DUSP16Q9BY84 665 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 EFCAB1Q9HAE3 211 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 GTSE1Q9NYZ3 720 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 PRPF19Q9UMS4 504 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 CDYLQ9Y232 598 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 PIN4Q9Y237 131 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 FYNP06241 537 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 RPL5P46777 297 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 PRKAA1Q13131 559 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 MAP7Q14244 749 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 DCAF4L1Q3SXM0 396 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 GK5Q6ZS86 529 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 PAQR9Q6ZVX9 377 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 ZC3HC1Q86WB0 502 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 TMEM151AQ8N4L1 468 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 METTL25Q8N6Q8 603 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 ATP6V1E2Q96A05 226 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 TNIP3Q96KP6 325 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 KLHL32Q96NJ5 620 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 SIK2Q9H0K1 926 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 COPG1Q9Y678 874 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC4A7Q9Y6M7 1214 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 A0A0G2JLL6 359 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 SMIM31A0A1B0GVY4 71 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 KCNU1A8MYU2 1149 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 DAB1O75553 588 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 RNASEH2AO75792 299 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 CABYRO75952 493 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 YBX3P16989 372 aaKnown RBP eCLIP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 NPR3P17342 541 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 FGFR3P22607 806 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 PPARGP37231 505 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 RANBP1P43487 201 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 TAF6P49848 677 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 PLK1P53350 603 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 ZYG11AQ6WRX3 759 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 PDZD4Q76G19 769 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 PRRT2Q7Z6L0 340 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 LSMEM2Q8N112 164 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 PRICKLE1Q96MT3 831 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 Q9H521 79 aa9.4□□□□□ -0.91
LIMCH1-215ENST00000512632 ASB14A6NK59 587 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 PIRO00625 290 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 USP17L7P0C7H9 530 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 PTPN1P18031 435 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 MYBPC1Q00872 1141 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 LRRC23Q53EV4 343 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 MARVELD2Q8N4S9 558 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 IPMKQ8NFU5 416 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 PDCD6IPQ8WUM4 868 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 ISL2Q96A47 359 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 RIMS3Q9UJD0 308 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 ACOT9Q9Y305 439 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 VILLO15195 856 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 SLC35E2BP0CK96 405 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 SCNN1AP37088 669 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 LILRA4P59901 499 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 DGKDQ16760 1214 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 IL23RQ5VWK5 629 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 ESRP1Q6NXG1 681 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 NOTUMQ6P988 496 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CEP97Q8IW35 865 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CENPLQ8N0S6 344 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CNTD1Q8N815 330 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 ZFP28Q8NHY6 868 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CHST12Q9NRB3 414 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 DDNO94850 711 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 NUMBP49757 651 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 MYLK3Q32MK0 819 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 SH2D4BQ5SQS7 431 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 KCTD11Q693B1 232 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 RWDD4Q6NW29 188 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 MAMDC4Q6UXC1 1216 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CYP2R1Q6VVX0 501 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CLEC20AQ6ZU45 233 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 PGAM4Q8N0Y7 254 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 RNF34Q969K3 372 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 EME1Q96AY2 570 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 FAM124BQ9H5Z6 455 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 TCAF2A6NFQ2 919 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 DENRO43583 198 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 PGK1P00558 417 aa9.39□□□□□ -0.91
LIMCH1-215ENST00000512632 CSE1LP55060 971 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms