RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TUBA1CQ9BQE3 449 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 STARD7Q9NQZ5 370 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 OBP2AQ9NY56 170 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 PAM16Q9Y3D7 125 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 EID1Q9Y6B2 187 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 MBD3L5A6NJ08 208 aaPredicted RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 FAM72CH0Y354 149 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 HNRNPDLO14979 420 aaKnown RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 ZG16O60844 167 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 RPP40O75818 363 aaKnown RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 APOHP02749 345 aaPredicted RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 RPL3P39023 403 aaKnown RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 CALCRLQ16602 461 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 FAM72AQ5TYM5 149 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 TMEM268Q5VZI3 342 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 FAM72DQ6L9T8 149 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 RHBDF2Q6PJF5 856 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 SMIM29Q86T20 159 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 FAM72BQ86X60 149 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 IL17RCQ8NAC3 791 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 CLEC4CQ8WTT0 213 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 FAR1Q8WVX9 515 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 PGLYRP2Q96PD5 576 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 FRG2BQ96QU4 278 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 OR1F2PQ96R84 312 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 GDF15Q99988 308 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 TRMT61BQ9BVS5 477 aaKnown RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 UBTD1Q9HAC8 227 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 Q9N2J8 555 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 SCRT2Q9NQ03 307 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 TMEM248Q9NWD8 314 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 TCF19Q9Y242 345 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 SLC45A1Q9Y2W3 748 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 COL2A1P02458 1487 aaPredicted RBP3.01□□□□□ -1.93
NUP54-208ENST00000508604 SNED1Q8TER0 1413 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 DYTNA2CJ06 578 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 KIF28PB7ZC32 967 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 RASA4BC9J798 803 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 EDIL3O43854 480 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 CKMT1AP12532 417 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 ZNF114Q8NC26 417 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 SORCS1Q8WY21 1168 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 TMEM18Q96B42 140 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 TM7SF3Q9NS93 570 aa3.01□□□□□ -1.93
NUP54-208ENST00000508604 IGHV4OR15-8A0A075B7B6 117 aa3□□□□□ -1.93
NUP54-208ENST00000508604 A0A1B0GVY2 172 aa3□□□□□ -1.93
NUP54-208ENST00000508604 PCDH17O14917 1159 aa3□□□□□ -1.93
NUP54-208ENST00000508604 TSPAN6O43657 245 aa3□□□□□ -1.93
NUP54-208ENST00000508604 FGF17O60258 216 aa3□□□□□ -1.93
NUP54-208ENST00000508604 CCNT1O60563 726 aaKnown RBP3□□□□□ -1.93
NUP54-208ENST00000508604 CLDN7O95471 211 aa3□□□□□ -1.93
NUP54-208ENST00000508604 CH25HO95992 272 aa3□□□□□ -1.93
NUP54-208ENST00000508604 ATP1A1P05023 1023 aaKnown RBP3□□□□□ -1.93
NUP54-208ENST00000508604 HARSP12081 509 aaKnown RBP3□□□□□ -1.93
NUP54-208ENST00000508604 FCGR2AP12318 317 aa3□□□□□ -1.93
NUP54-208ENST00000508604 KCNA5P22460 613 aa3□□□□□ -1.93
NUP54-208ENST00000508604 RCAN1P53805 252 aa3□□□□□ -1.93
NUP54-208ENST00000508604 SF3A3Q12874 501 aaKnown RBP eCLIP3□□□□□ -1.93
NUP54-208ENST00000508604 CTTNQ14247 550 aaKnown RBP3□□□□□ -1.93
NUP54-208ENST00000508604 KLHL24Q6TFL4 600 aa3□□□□□ -1.93
NUP54-208ENST00000508604 MYPOPQ86VE0 399 aaPredicted RBP3□□□□□ -1.93
NUP54-208ENST00000508604 TMC8Q8IU68 726 aa3□□□□□ -1.93
NUP54-208ENST00000508604 HDAC7Q8WUI4 952 aa3□□□□□ -1.93
NUP54-208ENST00000508604 SCMH1Q96GD3 660 aa3□□□□□ -1.93
NUP54-208ENST00000508604 DDX23Q9BUQ8 820 aaKnown RBP3□□□□□ -1.93
NUP54-208ENST00000508604 TRIM31Q9BZY9 425 aa3□□□□□ -1.93
NUP54-208ENST00000508604 LHPPQ9H008 270 aa3□□□□□ -1.93
NUP54-208ENST00000508604 PDE11AQ9HCR9 933 aa3□□□□□ -1.93
NUP54-208ENST00000508604 LIN7CQ9NUP9 197 aaKnown RBP3□□□□□ -1.93
NUP54-208ENST00000508604 MST1RQ04912 1400 aa3□□□□□ -1.93
NUP54-208ENST00000508604 P2RY10O00398 339 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 AFPP02771 609 aaKnown RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 KRT5P13647 590 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 EEF1GP26641 437 aaKnown RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 CDKN1AP38936 164 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 PRIM2P49643 509 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 FAM3BP58499 235 aaPredicted RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 PMS2P11Q13670 270 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 ALKBH1Q13686 389 aaKnown RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 PKP1Q13835 747 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 FCN2Q15485 313 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 SYTL3Q4VX76 610 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 DCAF6Q58WW2 860 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 HIBCHQ6NVY1 386 aaPredicted RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 DGLUCYQ7Z3D6 616 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 WDR5BQ86VZ2 330 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 RBFAQ8N0V3 343 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 HMGB4Q8WW32 186 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 BRI3BPQ8WY22 251 aa2.99□□□□□ -1.93
NUP54-208ENST00000508604 CADM1Q9BY67 442 aaKnown RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 HERC5Q9UII4 1024 aaKnown RBP2.99□□□□□ -1.93
NUP54-208ENST00000508604 IGKV3D-15A0A087WSY6 115 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 A0A1B0GU03 582 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 HNRNPCL2B2RXH8 293 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 CFC1BP0CG36 223 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 CFC1P0CG37 223 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 TYK2P29597 1187 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 FMO4P31512 558 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 PMP22Q01453 160 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 GALEQ14376 348 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms