RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 HSPA14Q0VDF9 509 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 C16orf72Q14CZ0 275 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TARBP2Q15633 366 aaKnown RBP13.31□□□□□ -0.28
PTPRF-215ENST00000496447 NEPROQ6NW34 567 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ANKRD49Q8WVL7 239 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TTPALQ9BTX7 342 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 IL22Q9GZX6 179 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 PRKAG3Q9UGI9 489 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 A0A0A0MRY4 1105 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 MMP3P08254 477 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ATP6V1C1P21283 382 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 HTR1BP28222 390 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 RAB14P61106 215 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ACSM2AQ08AH3 577 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ACSM2BQ68CK6 577 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 LPCAT2Q7L5N7 544 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 LUZP2Q86TE4 346 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 CHPFQ8IZ52 775 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 CD99L2Q8TCZ2 262 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SPATA13Q96N96 652 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 QRFPRQ96P65 431 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 MMADHCQ9H3L0 296 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-215ENST00000496447 RERGLQ9H628 205 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.31□□□□□ -0.285e-9■■□□□ 13.6
PTPRF-215ENST00000496447 SESN1Q9Y6P5 492 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 RIC1Q4ADV7 1423 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SMIM35A0A1B0GVV1 85 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 VPS4BO75351 444 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 FARP2O94887 1054 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-215ENST00000496447 PABPC1P11940 636 aaKnown RBP13.31□□□□□ -0.28
PTPRF-215ENST00000496447 LAG3P18627 525 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SPIDRQ14159 915 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ARHGAP17Q68EM7 881 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 FLCNQ8NFG4 579 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 DMGDHQ9UI17 866 aaKnown RBP13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ASTN1O14525 1302 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 CCDC154A6NI56 674 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SELPP16109 830 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 GABRR2P28476 465 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 OR1D2P34982 312 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TOMM20Q15388 145 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 PLEKHA7Q6IQ23 1121 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SYT12Q8IV01 421 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 STARD8Q92502 1023 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 OSBPL6Q9BZF3 934 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 DNAJC18Q9H819 358 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 RNPEPL1Q9HAU8 725 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 NDUFAF1Q9Y375 327 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 COL1A2P08123 1366 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SMIM22K7EJ46 135 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ADH1CP00326 375 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SPATA31D3P0C874 917 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 ITGB5P18084 799 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 GLUD2P49448 558 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 NCF4Q15080 339 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 OASLQ15646 514 aaKnown RBP13.31□□□□□ -0.28
PTPRF-215ENST00000496447 NPNTQ6UXI9 565 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 SPATA31D4Q6ZUB0 917 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TOP6BLQ8N6T0 577 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 AGAP11Q8TF27 550 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TSPAN18Q96SJ8 248 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TLE6Q9H808 572 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 STMN3Q9NZ72 180 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 NINJ2Q9NZG7 142 aa13.31□□□□□ -0.28
PTPRF-215ENST00000496447 TNFAIP8O95379 198 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 ANXA5P08758 320 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 FCGR1AP12314 374 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 CCNB1P14635 433 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 BRCC3P46736 316 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 CCR4P51679 360 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 PLK1P53350 603 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 SHROOM1Q2M3G4 852 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 FGD2Q7Z6J4 655 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 OR52K1Q8NGK4 314 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 TCP10LQ8TDR4 215 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 GPR152Q8TDT2 470 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 MTFMTQ96DP5 389 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 SNRNP25Q9BV90 132 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 TNPO3Q9Y5L0 923 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 COL3A1P02461 1466 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 TLR5O60602 858 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 FAM58BPP0C7Q3 252 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 UGCGQ16739 394 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 TATDN1Q6P1N9 297 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 IL27RAQ6UWB1 636 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 CEP68Q76N32 757 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 ILDR1Q86SU0 546 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 FAM126BQ8IXS8 530 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 PPP1R14AQ96A00 147 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 DNAJC1Q96KC8 554 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 ASB2Q96Q27 587 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 ZNF184Q99676 751 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 DAPK2Q9UIK4 370 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 RABGEF1Q9UJ41 708 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 POLR1DQ9Y2S0 133 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 BUD23O43709 281 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 NTSP30990 170 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 POMGNT2Q8NAT1 580 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 MEI4A8MW99 385 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 CLDN5O00501 218 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms