RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 GUSBP11Q6P575 273 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 FOXR1Q6PIV2 292 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 CRTC1Q6UUV9 634 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 ERN2Q76MJ5 926 aaKnown RBP14.29□□□□□ -0.12
VARS-227ENST00000489979 DCP2Q8IU60 420 aaKnown RBP14.29□□□□□ -0.12
VARS-227ENST00000489979 FAM174AQ8TBP5 190 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 GRAMD1AQ96CP6 724 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 CCDC97Q96F63 343 aaPredicted RBP14.29□□□□□ -0.12
VARS-227ENST00000489979 PRR11Q96HE9 360 aaPredicted RBP14.29□□□□□ -0.12
VARS-227ENST00000489979 CCDC114Q96M63 670 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 PSMB7Q99436 277 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 GPR27Q9NS67 375 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 CNTN6Q9UQ52 1028 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 TBC1D30Q9Y2I9 924 aa14.29□□□□□ -0.12
VARS-227ENST00000489979 PMS2P1A4D2B8 440 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 POM121BA6NF01 834 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 CDRT15L2A8MXV6 281 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 P4HA2O15460 535 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 MED7O43513 233 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 SMAD6O43541 496 aaKnown RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 CNTN5O94779 1100 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 LETM1O95202 739 aaPredicted RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 PAK4O96013 591 aaPredicted RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 CSF2P04141 144 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 NME1P15531 152 aaKnown RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 CDH4P55283 916 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 KRT83P78385 493 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 PDCLQ13371 301 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 MAPK8IP2Q13387 824 aaPredicted RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 FGL2Q14314 439 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 MEA1Q16626 185 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 KYAT3Q6YP21 454 aaKnown RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 CCDC81Q6ZN84 652 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 RBM44Q6ZP01 1051 aaKnown RBP14.28□□□□□ -0.12
VARS-227ENST00000489979 EHBP1Q8NDI1 1231 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 GRIN3AQ8TCU5 1115 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 ZNF606Q8WXB4 792 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 SLC2A13Q96QE2 648 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 HDAC8Q9BY41 377 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 SLC17A9Q9BYT1 436 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 SIK2Q9H0K1 926 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 ACP6Q9NPH0 428 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 IL36AQ9UHA7 158 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 VPS51Q9UID3 782 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 KLF15Q9UIH9 416 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 ZDHHC9Q9Y397 364 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 PCDHGA8Q9Y5G5 932 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 CSNK1G3Q9Y6M4 447 aa14.28□□□□□ -0.12
VARS-227ENST00000489979 SPTY2D1-AS1A0A0U1RR47 76 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 EME2A4GXA9 379 aaPredicted RBP14.27□□□□□ -0.13
VARS-227ENST00000489979 H3BM21 787 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 RAD51BO15315 384 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 AQP9O43315 295 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 THAP12O43422 761 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 PAGE1O75459 146 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 GRAP2O75791 330 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 RHOCP08134 193 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 NME3Q13232 169 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 CLN3Q13286 438 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 DRAP1Q14919 205 aaPredicted RBP14.27□□□□□ -0.13
VARS-227ENST00000489979 NR0B2Q15466 257 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 DEFB133Q30KQ1 61 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 ZSCAN23Q3MJ62 389 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 C5orf22Q49AR2 442 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 ALFQ53S48 1182 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 PERM1Q5SV97 790 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 LINGO4Q6UY18 593 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 PRICKLE2Q7Z3G6 844 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 PARGQ86W56 976 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 TPCN2Q8NHX9 752 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 LMX1AQ8TE12 382 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 CEP63Q96MT8 703 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 GSDMAQ96QA5 445 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 C2orf49Q9BVC5 232 aaPredicted RBP14.27□□□□□ -0.13
VARS-227ENST00000489979 SCAND2PQ9GZW5 306 aaPredicted RBP14.27□□□□□ -0.13
VARS-227ENST00000489979 TNKS2Q9H2K2 1166 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 NCKIPSDQ9NZQ3 722 aa14.27□□□□□ -0.13
VARS-227ENST00000489979 IPO11Q9UI26 975 aaKnown RBP14.27□□□□□ -0.13
VARS-227ENST00000489979 CASC3O15234 703 aaKnown RBP14.26□□□□□ -0.13
VARS-227ENST00000489979 HSF2BPO75031 334 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 LEFTY1O75610 366 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 ENDOD1O94919 500 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 TNFSF15O95150 251 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 GLI1P08151 1106 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 JUNDP17535 347 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 GNA15P30679 374 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 RABIFP47224 123 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 NEK3P51956 506 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 RPS21P63220 83 aaKnown RBP14.26□□□□□ -0.13
VARS-227ENST00000489979 MTA1Q13330 715 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 PDE1CQ14123 709 aaPredicted RBP14.26□□□□□ -0.13
VARS-227ENST00000489979 ARL13BQ3SXY8 428 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 EFHC1Q5JVL4 640 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 TPRG1LQ5T0D9 272 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 KIAA1161Q6NSJ0 714 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 C22orf39Q6P5X5 142 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 DPY19L3Q6ZPD9 716 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 ARL14Q8N4G2 192 aa14.26□□□□□ -0.13
VARS-227ENST00000489979 WDR36Q8NI36 951 aaKnown RBP14.26□□□□□ -0.13
VARS-227ENST00000489979 PPP1R16AQ96I34 528 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms