RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ADGRG6Q86SQ4 1221 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 TAC4Q86UU9 113 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 PDSS2Q86YH6 399 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 SPNS2Q8IVW8 549 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 DENND6AQ8IWF6 608 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 SPDYE1Q8NFV5 336 aaPredicted RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 ZNF483Q8TF39 744 aaPredicted RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 GDPD5Q8WTR4 605 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 GPR22Q99680 433 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 PTPN18Q99952 460 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 RTKNQ9BST9 563 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 MATN2O00339 956 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 RNASEH1O60930 286 aaKnown RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 F9P00740 461 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 TFEBP19484 476 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 PEX2P28328 305 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 RPL14P50914 215 aaKnown RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 PAN2Q504Q3 1202 aaKnown RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 ZYG11AQ6WRX3 759 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 IFT43Q96FT9 208 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 VAT1Q99536 393 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 RAP2CQ9Y3L5 183 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 CAPN15O75808 1086 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 THP07101 528 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 ZNF865P0CJ78 1059 aaPredicted RBP18.23■□□□□ 0.51
VIM-206ENST00000487938 BDNFP23560 247 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 PIK3R1P27986 724 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 PRDX6P30041 224 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 NUDT2P50583 147 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 MTTPP55157 894 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 MPP1Q00013 466 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 CCL14Q16627 93 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 LIPMQ5VYY2 423 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 METTL21CQ5VZV1 264 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 SNX32Q86XE0 403 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 APLFQ8IW19 511 aaPredicted RBP18.23■□□□□ 0.51
VIM-206ENST00000487938 FSTL5Q8N475 847 aaPredicted RBP18.23■□□□□ 0.51
VIM-206ENST00000487938 IPMKQ8NFU5 416 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 DPF3Q92784 378 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 PPP2R3CQ969Q6 453 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 TSNARE1Q96NA8 513 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 OMDQ99983 421 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 KIFC1Q9BW19 673 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 FTHL17Q9BXU8 183 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 DRC3Q9H069 523 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 CPA4Q9UI42 421 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 GRID2O43424 1007 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 VAPBO95292 243 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 SLC35E2BP0CK96 405 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 GNAT1P11488 350 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 MSX2P35548 267 aaPredicted RBP18.23■□□□□ 0.51
VIM-206ENST00000487938 AQP4P55087 323 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 TMEM198Q66K66 360 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 SEL1L3Q68CR1 1132 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 NXNQ6DKJ4 435 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 PM20D1Q6GTS8 502 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 TMC7Q7Z402 723 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 MYLPFQ96A32 169 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 MARK4Q96L34 752 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 KLHL4Q9C0H6 718 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 RHOJQ9H4E5 214 aa18.23■□□□□ 0.51
VIM-206ENST00000487938 DOCK3Q8IZD9 2030 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 HDAC3O15379 428 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 H2AFYO75367 372 aaKnown RBP18.22■□□□□ 0.51
VIM-206ENST00000487938 JUNP05412 331 aaKnown RBP18.22■□□□□ 0.51
VIM-206ENST00000487938 FAM163BP0C2L3 166 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 MSLNQ13421 630 aaPredicted RBP18.22■□□□□ 0.51
VIM-206ENST00000487938 TRIP10Q15642 601 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 TIGD5Q53EQ6 642 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 ESRP1Q6NXG1 681 aaKnown RBP18.22■□□□□ 0.51
VIM-206ENST00000487938 DCLRE1AQ6PJP8 1040 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 CEP97Q8IW35 865 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 TMEM86AQ8N2M4 240 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 JADE3Q92613 823 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 SMARCD1Q96GM5 515 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 ZNF419Q96HQ0 510 aaPredicted RBP18.22■□□□□ 0.51
VIM-206ENST00000487938 CDH9Q9ULB4 789 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 ST3GAL5Q9UNP4 418 aa18.22■□□□□ 0.51
VIM-206ENST00000487938 THRAP10827 490 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 CSRP3P50461 194 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 SCNN1GP51170 649 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 IRX1P78414 480 aaPredicted RBP18.21■□□□□ 0.51
VIM-206ENST00000487938 SLC12A1Q13621 1099 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 FAM110CQ1W6H9 321 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 PKN3Q6P5Z2 889 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 MFSD6LQ8IWD5 586 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 CENPLQ8N0S6 344 aaPredicted RBP18.21■□□□□ 0.51
VIM-206ENST00000487938 NXNL1Q96CM4 212 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 CATSPER2Q96P56 530 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 TBL1YQ9BQ87 522 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 ATXN3LQ9H3M9 355 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 FAM105AQ9NUU6 356 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 SLC38A7Q9NVC3 462 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 RRN3Q9NYV6 651 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 SLC2A6Q9UGQ3 507 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 ANKRD6Q9Y2G4 727 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 RGSL1A5PLK6 1076 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 H3BNX3 289 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 DLX3O60479 287 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 ZNF189O75820 626 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms