RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 PXDC1Q5TGL8 231 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 FAM160B1Q5W0V3 765 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 SYDE1Q6ZW31 735 aaPredicted RBP12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 CHSY1Q86X52 802 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 MAP4K3Q8IVH8 894 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 SIX6OS1Q8N1H7 587 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 TMEM161BQ8NDZ6 487 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 SLC22A8Q8TCC7 542 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 TOE1Q96GM8 510 aaKnown RBP12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 MMP19Q99542 508 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 C17orf62Q9BQA9 187 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 TUBA1CQ9BQE3 449 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 CCDC106Q9BWC9 280 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 WNT8AQ9H1J5 351 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 IKZF4Q9H2S9 585 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 RAD21L1Q9H4I0 556 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 NARFLQ9H6Q4 476 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 VPS37BQ9H9H4 285 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 CD93Q9NPY3 652 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 RBPJLQ9UBG7 517 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 CAB39Q9Y376 341 aaPredicted RBP12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 NCANO14594 1321 aa12.87□□□□□ -0.35
RTFDC1-207ENST00000477573 ARID2Q68CP9 1835 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 UBA1P22314 1058 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 RFX1P22670 979 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 RPL9P32969 192 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 COILP38432 576 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 NKX2-5P52952 324 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 TMBIM6P55061 237 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 MRPL28Q13084 256 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 CLEC16AQ2KHT3 1053 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 KRT80Q6KB66 452 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 USP37Q86T82 979 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 CDR2LQ86X02 465 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 LINC00518Q8N0U6 118 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 BEND7Q8N7W2 519 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 SHCBP1Q8NEM2 672 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 JPH3Q8WXH2 748 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 ZNF512Q96ME7 567 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 FOXP3Q9BZS1 431 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 ADNPQ9H2P0 1102 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 NOL6Q9H6R4 1146 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 NRBP2Q9NSY0 501 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 OLAHQ9NV23 265 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 HSPBP1Q9NZL4 362 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 EMC3Q9P0I2 261 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 CDH22Q9UJ99 828 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 RIMS3Q9UJD0 308 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 ARHGEF37A1IGU5 675 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 DENND3A2RUS2 1198 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 PEX10O60683 326 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 HLA-DRAP01903 254 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 HMGN1P05114 100 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 ACTN1P12814 892 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 ALDH18A1P54886 795 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 CDKL1Q00532 357 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 MYL7Q01449 175 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 PRKD1Q15139 912 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 KCTD19Q17RG1 926 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 RNASEH2BQ5TBB1 312 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 GPAT2Q6NUI2 795 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 BNC2Q6ZN30 1099 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 GSTA5Q7RTV2 222 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 ARMC8Q8IUR7 673 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 RPRD1AQ96P16 312 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 PDLIM7Q9NR12 457 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 PARVAQ9NVD7 372 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 KLF15Q9UIH9 416 aa12.86□□□□□ -0.35
RTFDC1-207ENST00000477573 IGKV6D-21A0A0A0MT36 114 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 DCAF8L1A6NGE4 600 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 TP73O15350 636 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 HDAC3O15379 428 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 SORBS3O60504 671 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 DEAF1O75398 565 aaPredicted RBP12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 PGK2P07205 417 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 KRT15P19012 456 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 GARTP22102 1010 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 IDUAP35475 653 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 VAMP7P51809 220 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 CCNA1P78396 465 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 POU6F2P78424 691 aaPredicted RBP12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 ARID5AQ03989 594 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 FSTL1Q12841 308 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 TRAF2Q12933 501 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 SP140Q13342 867 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 TAF5Q15542 800 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 MTERF2Q49AM1 385 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 FCRLBQ6BAA4 426 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 METTL7BQ6UX53 244 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 ZNF704Q6ZNC4 412 aaPredicted RBP12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 PRPF39Q86UA1 669 aaKnown RBP12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 LACC1Q8IV20 430 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 COLGALT2Q8IYK4 626 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 RDH13Q8NBN7 331 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 SLC7A3Q8WY07 619 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 SEPT1Q8WYJ6 367 aa12.85□□□□□ -0.35
RTFDC1-207ENST00000477573 NXPE3Q969Y0 559 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms