RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 VANGL2Q9ULK5 521 aa12.9□□□□□ -0.34
SKA3-206ENST00000475251 TBC1D30Q9Y2I9 924 aa12.9□□□□□ -0.34
SKA3-206ENST00000475251 HEMK1Q9Y5R4 338 aaPredicted RBP12.9□□□□□ -0.34
SKA3-206ENST00000475251 SYNJ2BP-COX16A0A087WUM0 186 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 LY6G6EA0A0G2JKS1 128 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 SPTY2D1-AS1A0A0U1RR47 76 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 TPP1O14773 563 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 PSMA7O14818 248 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 HSF2BPO75031 334 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 CTSLP07711 333 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 TGM2P21980 687 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 PPP1R2P41236 205 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 RABIFP47224 123 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 NEK3P51956 506 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 CLDN2P57739 230 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 SKOR1P84550 965 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 NR0B2Q15466 257 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 TMEM259Q4ZIN3 620 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 XKR5Q6UX68 686 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 EFL1Q7Z2Z2 1120 aaKnown RBP12.89□□□□□ -0.35
SKA3-206ENST00000475251 OR2A12Q8NGT7 310 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 BTN2A2Q8WVV5 523 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 KAT5Q92993 513 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 NAT6Q93015 286 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 ATXN7L3BQ96GX2 97 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 FEM1CQ96JP0 617 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 IL12RB2Q99665 862 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 SLC17A9Q9BYT1 436 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 FAM117AQ9C073 453 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 GPR27Q9NS67 375 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 COX16Q9P0S2 106 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 IL36AQ9UHA7 158 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 CNTN6Q9UQ52 1028 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 ENTPD2Q9Y5L3 495 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 OR51B4Q9Y5P0 310 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 U3KQA8 63 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 DOCK9Q9BZ29 2069 aa12.89□□□□□ -0.35
SKA3-206ENST00000475251 CPED1A4D0V7 1026 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 EME2A4GXA9 379 aaPredicted RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 TRIM49BA6NDI0 452 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 CDRT15L2A8MXV6 281 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 FPGTO14772 594 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 AQP9O43315 295 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 NEBLO76041 1014 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 LETM1O95202 739 aaPredicted RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 CALCAP01258 141 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 CENPBP07199 599 aaPredicted RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 RHOCP08134 193 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 MYF5P13349 255 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 CSRP3P50461 194 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 PMS1P54277 932 aaKnown RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 SNX16P57768 344 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 PDCLQ13371 301 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 PNOCQ13519 176 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 CDKN3Q16667 212 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 C5orf22Q49AR2 442 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 ZNF542PQ5EBM4 170 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 ACBD5Q5T8D3 534 aaPredicted RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 SEL1L3Q68CR1 1132 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 DENND1BQ6P3S1 775 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 PRICKLE2Q7Z3G6 844 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 CLEC14AQ86T13 490 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 SETD3Q86TU7 594 aaPredicted RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 DEFB106AQ8N104 65 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 DCAF4L2Q8NA75 395 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 LMO3Q8TAP4 145 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 ZNF606Q8WXB4 792 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 ARRDC3Q96B67 414 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 FAM81BQ96LP2 452 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 NOX5Q96PH1 765 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 SLC2A13Q96QE2 648 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 TMEM51Q9NW97 253 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 HOOK1Q9UJC3 728 aaKnown RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 ZFR2Q9UPR6 939 aaKnown RBP12.88□□□□□ -0.35
SKA3-206ENST00000475251 PAXBP1Q9Y5B6 917 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 HS3ST4Q9Y661 456 aa12.88□□□□□ -0.35
SKA3-206ENST00000475251 TDRD6O60522 2096 aaKnown RBP12.87□□□□□ -0.35
SKA3-206ENST00000475251 CCDC187A0A096LP49 1063 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 THAP12O43422 761 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 ITGA2BP08514 1039 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 JUNDP17535 347 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 GNA15P30679 374 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 PITX1P78337 314 aaPredicted RBP12.87□□□□□ -0.35
SKA3-206ENST00000475251 NME3Q13232 169 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 SGCGQ13326 291 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 EIF3IQ13347 325 aaKnown RBP12.87□□□□□ -0.35
SKA3-206ENST00000475251 PTK2BQ14289 1009 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 FZD2Q14332 565 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 KIAA1614Q5VZ46 1190 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 OR6B2Q6IFH4 312 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 RETSATQ6NUM9 610 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 GUSBP11Q6P575 273 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 FOXR1Q6PIV2 292 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 ENOSF1Q7L5Y1 443 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 ARHGEF19Q8IW93 802 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 EHBP1Q8NDI1 1231 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 OR52K2Q8NGK3 314 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 GRIN3AQ8TCU5 1115 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 SMARCE1Q969G3 411 aa12.87□□□□□ -0.35
SKA3-206ENST00000475251 DHTKD1Q96HY7 919 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms