RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HMGCRP04035 888 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 IL2P60568 153 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 TBX2Q13207 712 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 EEPD1Q7L9B9 569 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 RFKQ969G6 155 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PLK2Q9NYY3 685 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 G3V2T6 193 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 M0QYT0 321 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 MAGEC1O60732 1142 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 EIF4BP23588 611 aaKnown RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CBX5P45973 191 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 GPR1P46091 355 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 NRG3P56975 720 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ZMYND11Q15326 602 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SPATS1Q496A3 300 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 POLNQ7Z5Q5 900 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 NECAB2Q7Z6G3 386 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 TTC7BQ86TV6 843 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CBWD2Q8IUF1 395 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ABRAQ8N0Z2 381 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PPP2R3BQ9Y5P8 575 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CYP2F1P24903 491 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 MAP1BP46821 2468 aaKnown RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF655Q8N720 491 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 METTL6Q8TCB7 284 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ISCA1Q9BUE6 129 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 BARX2Q9UMQ3 279 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PCDHA11Q9Y5I1 949 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PGK1P00558 417 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 HIST1H2ABP04908 130 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ITGA4P13612 1032 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ELP6Q0PNE2 266 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PTPAQ15257 358 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 TMPRSS11AQ6ZMR5 421 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 HIST3H2AQ7L7L0 130 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SNX32Q86XE0 403 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 HIST1H2ACQ93077 130 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SHCBP1LQ9BZQ2 653 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SEC14L4Q9UDX3 406 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 RAP2CQ9Y3L5 183 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF879B4DU55 563 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CLDN25C9JDP6 229 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ENTPD3O75355 529 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF484Q5JVG2 852 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PRCCQ92733 491 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 TSPAN18Q96SJ8 248 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 DPP7Q9UHL4 492 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SHOX2O60902 331 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CCR1P32246 355 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 GRIA3P42263 894 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CRTC3Q6UUV7 619 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SMIM5Q71RC9 77 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 GPSM1Q86YR5 675 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 SCAIQ8N9R8 606 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 TLR10Q9BXR5 811 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 HDAC3O15379 428 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 APBA3O96018 575 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 ELK3P41970 407 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 USP46P62068 366 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 NRF1Q16656 503 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SP8Q8IXZ3 490 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 LRRC19Q9H756 370 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 OPTCQ9UBM4 332 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 MLXQ9UH92 298 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 M0QX08 132 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SREBF1P36956 1147 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 TTPAP49638 278 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 UGT2B15P54855 530 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SUZ12Q15022 739 aaKnown RBP13.46□□□□□ -0.25
COL6A3-209ENST00000472056 MAPKAPK3Q16644 382 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SWI5Q1ZZU3 235 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 TMEM159Q96B96 161 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 CLCC1Q96S66 551 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 FAM196BA6NMK8 535 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 DDX3XO00571 662 aaKnown RBP eCLIP13.46□□□□□ -0.25
COL6A3-209ENST00000472056 PLEKP08567 350 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-209ENST00000472056 OR56A5P0C7T3 313 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 ERVK-10P10266 1014 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 TGFB3P10600 412 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SRFBP1Q8NEF9 429 aaKnown RBP13.46□□□□□ -0.25
COL6A3-209ENST00000472056 RABL2AQ9UBK7 228 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-209ENST00000472056 RABL2BQ9UNT1 228 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 ALFQ53S48 1182 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SLC25A41Q8N5S1 370 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 APOL2Q9BQE5 337 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 TDRD1Q9BXT4 1180 aaKnown RBP13.46□□□□□ -0.25
COL6A3-209ENST00000472056 GTF2A1LQ9UNN4 478 aa13.46□□□□□ -0.25
COL6A3-209ENST00000472056 SLC2A4P14672 509 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 ARF5P84085 180 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 PITPNAQ00169 270 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 MED28Q9H204 178 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 DBNDD1Q9H9R9 158 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 CLIC5Q9NZA1 410 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 LRRC10BA6NIK2 292 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 IFNGP01579 166 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 GPIP06744 558 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 PRKCIP41743 596 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 NME5P56597 212 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 C10orf120Q5SQS8 335 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 MARC1Q5VT66 337 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms